RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 CYP2C9P11712 490 aa12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 TXKP42681 527 aa12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 IGBP1P78318 339 aa12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 MDM2Q00987 491 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 PPFIA1Q13136 1202 aa12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 BECN1Q14457 450 aa12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 PLPPR4Q7Z2D5 763 aa12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 SESTD1Q86VW0 696 aa12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 CCDC60Q8IWA6 550 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 HAS1Q92839 578 aa12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 TNPO1Q92973 898 aaKnown RBP12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 TRIM43Q96BQ3 446 aaPredicted RBP12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 SETD4Q9NVD3 440 aa12.91□□□□□ -0.34
CCDC88C-212ENST00000556767 PDE4DIPQ5VU43 2346 aa12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 BRCA2P51587 3418 aa12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 KIAA0355O15063 1070 aa12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 GNAT1P11488 350 aa12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 ZNF200P98182 395 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 PLCB4Q15147 1175 aa12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 RILPL1Q5EBL4 403 aa12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 PRPF38BQ5VTL8 546 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 NCAPH2Q6IBW4 605 aa12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 ATP6V0A1Q93050 837 aa12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 TMEM60Q9H2L4 133 aa12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 HIPK3Q9H422 1215 aa12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 TTC12Q9H892 705 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 TBX21Q9UL17 535 aa12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 PCDHA12Q9UN75 941 aa12.9□□□□□ -0.34
CCDC88C-212ENST00000556767 IGKV6D-21A0A0A0MT36 114 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 POTEB3A0JP26 581 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 STX6O43752 255 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 OR52Z1P0C646 297 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 INSRRP14616 1297 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 SLC26A2P50443 739 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 TOB1P50616 345 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 PPP2R5CQ13362 524 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 ORC2Q13416 577 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 GRIK4Q16099 956 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 POTEBQ6S5H4 581 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 BRAPQ7Z569 592 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 RETREG2Q8NC44 543 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 BANK1Q8NDB2 785 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 RDM1Q8NG50 284 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 AFAP1L1Q8TED9 768 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 LMBR1Q8WVP7 490 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 BADQ92934 168 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 VAV3Q9UKW4 847 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 PCDHB6Q9Y5E3 794 aa12.89□□□□□ -0.35
CCDC88C-212ENST00000556767 NRCAMQ92823 1304 aa12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 EML1O00423 815 aa12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 TREHO43280 583 aa12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 TIMP1P01033 207 aa12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 ITGB8P26012 769 aa12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 CYP2C18P33260 490 aa12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 MAGEA10P43363 369 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 BFSP2Q13515 415 aa12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 HIC1Q14526 733 aa12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 FOXD4L5Q5VV16 416 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 CCDC155Q8N6L0 562 aa12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 ATP8B4Q8TF62 1192 aa12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 FOXD4L4Q8WXT5 416 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 MTMR9Q96QG7 549 aa12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 NOC4LQ9BVI4 516 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 MTMR6Q9Y217 621 aa12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 MAFBQ9Y5Q3 323 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 KAT6AQ92794 2004 aa12.88□□□□□ -0.35
CCDC88C-212ENST00000556767 MYH9P35579 1960 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 RRN3P2A6NIE6 340 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 HBP1O60381 514 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 TECP42680 631 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 CCL23P55773 120 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 PRKCEQ02156 737 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 PTGDRQ13258 359 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 PTK7Q13308 1070 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 EPHA7Q15375 998 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 UGCGQ16739 394 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 TMEM266Q2M3C6 531 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 B3GNT9Q6UX72 402 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 CHRDL2Q6WN34 429 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 TMEM199Q8N511 208 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 TRAPPC12Q8WVT3 735 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 BBXQ8WY36 941 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 FAM167AQ96KS9 214 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 NRBP2Q9NSY0 501 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 TUBE1Q9UJT0 475 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 UMODL1Q5DID0 1318 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 IGSF9BQ9UPX0 1349 aa12.87□□□□□ -0.35
CCDC88C-212ENST00000556767 POTEMA6NI47 508 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 DDX11L8A8MPP1 907 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 DKC1O60832 514 aaKnown RBP eCLIP12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 OATP04181 439 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 P4HBP07237 508 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 ATP4AP20648 1035 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 THPOP40225 353 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 QARSP47897 775 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 PSMC5P62195 406 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 CYP4A11Q02928 519 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 FPGSQ05932 587 aa12.86□□□□□ -0.35
CCDC88C-212ENST00000556767 RESTQ13127 1097 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms