RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 ITGB3P05106 788 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 COL6A1P12109 1028 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 ZNF28P17035 718 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 HMGA2P52926 109 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 NKX3-2P78367 333 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 ADAM17P78536 824 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 PLEKHG4Q58EX7 1191 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 LIMS2Q7Z4I7 341 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 ZC3H18Q86VM9 953 aaKnown RBP2.2□□□□□ -2.06
PRPF39-208ENST00000554785 SYNPOQ8N3V7 929 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 KISS1RQ969F8 398 aaPredicted RBP2.2□□□□□ -2.06
PRPF39-208ENST00000554785 EXOC2Q96KP1 924 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 PTPN18Q99952 460 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 SLC6A20Q9NP91 592 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 GPR27Q9NS67 375 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 ASH2LQ9UBL3 628 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 COA3Q9Y2R0 106 aaPredicted RBP2.2□□□□□ -2.06
PRPF39-208ENST00000554785 MRPS23Q9Y3D9 190 aaKnown RBP2.2□□□□□ -2.06
PRPF39-208ENST00000554785 TRAF6Q9Y4K3 522 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 RSF1Q96T23 1441 aaPredicted RBP2.2□□□□□ -2.06
PRPF39-208ENST00000554785 SYNJ1O43426 1573 aa2.2□□□□□ -2.06
PRPF39-208ENST00000554785 DISP3Q9P2K9 1392 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 SBNO2Q9Y2G9 1366 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 MROH6A6NGR9 719 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 PPP1R12AO14974 1030 aaPredicted RBP2.19□□□□□ -2.06
PRPF39-208ENST00000554785 SUMO1P63165 101 aaKnown RBP2.19□□□□□ -2.06
PRPF39-208ENST00000554785 TCEA2Q15560 299 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 LBX2Q6XYB7 198 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 OTOP3Q7RTS5 596 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 TTLL6Q8N841 843 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 SH3RF2Q8TEC5 729 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 FEZ1Q99689 392 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 YIPF4Q9BSR8 244 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 SLKQ9H2G2 1235 aaPredicted RBP2.19□□□□□ -2.06
PRPF39-208ENST00000554785 SMOC1Q9H4F8 434 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 EPB41L1Q9H4G0 881 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 CROTQ9UKG9 612 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 ADGRL1O94910 1474 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 PBRM1Q86U86 1689 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 CLASP1Q7Z460 1538 aa2.19□□□□□ -2.06
PRPF39-208ENST00000554785 TARBP1Q13395 1621 aaKnown RBP2.18□□□□□ -2.06
PRPF39-208ENST00000554785 ACOT7O00154 380 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 TUSC3Q13454 348 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 TKFCQ3LXA3 575 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 TAF7LQ5H9L4 462 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 FAM26FQ5R3K3 315 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 PRAMEF18Q5VWM3 479 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 STYK1Q6J9G0 422 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 ZNF662Q6ZS27 426 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 KIAA0907Q7Z7F0 614 aaPredicted RBP2.18□□□□□ -2.06
PRPF39-208ENST00000554785 YTHDC1Q96MU7 727 aaKnown RBP2.18□□□□□ -2.06
PRPF39-208ENST00000554785 NCOA5Q9HCD5 579 aaKnown RBP2.18□□□□□ -2.06
PRPF39-208ENST00000554785 PCDH18Q9HCL0 1135 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 SMPD4Q9NXE4 827 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 PPP4R1LQ9P1A2 415 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 WDR3Q9UNX4 943 aaKnown RBP eCLIP2.18□□□□□ -2.06
PRPF39-208ENST00000554785 CFTRP13569 1480 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 PLD2O14939 933 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 MATN3O15232 486 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 KLHL18O94889 574 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 RAPGEF3O95398 923 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 IL18BPO95998 194 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 PLATP00750 562 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 SOD2P04179 222 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 CKMP06732 381 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 C6orf222P0C671 652 aaPredicted RBP2.18□□□□□ -2.06
PRPF39-208ENST00000554785 GRK2P25098 689 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 GRK3P35626 688 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 GYS2P54840 703 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 GABREP78334 506 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 CHRNA2Q15822 529 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 C21orf62-AS1Q17RA5 79 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 HABP4Q5JVS0 413 aaKnown RBP2.18□□□□□ -2.06
PRPF39-208ENST00000554785 RSPO2Q6UXX9 243 aaPredicted RBP2.18□□□□□ -2.06
PRPF39-208ENST00000554785 SLC16A11Q8NCK7 471 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 NUDT10Q8NFP7 164 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 IGDCC4Q8TDY8 1250 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 DCAF4Q8WV16 495 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 NUDT11Q96G61 164 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 NAF1Q96HR8 494 aaKnown RBP2.18□□□□□ -2.06
PRPF39-208ENST00000554785 LCORQ96JN0 433 aaPredicted RBP2.18□□□□□ -2.06
PRPF39-208ENST00000554785 C8orf49Q96NF6 230 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 WWC2-AS2Q96NR7 200 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 MRPL4Q9BYD3 311 aaKnown RBP2.18□□□□□ -2.06
PRPF39-208ENST00000554785 CD244Q9BZW8 370 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 IPPKQ9H8X2 491 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 HSPBP1Q9NZL4 362 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 ST6GALNAC2Q9UJ37 374 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 CD2APQ9Y5K6 639 aa2.18□□□□□ -2.06
PRPF39-208ENST00000554785 SYNJ2O15056 1496 aa2.17□□□□□ -2.06
PRPF39-208ENST00000554785 POLA1P09884 1462 aaPredicted RBP2.17□□□□□ -2.06
PRPF39-208ENST00000554785 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP2.17□□□□□ -2.06
PRPF39-208ENST00000554785 ANKRD62A6NC57 917 aa2.17□□□□□ -2.06
PRPF39-208ENST00000554785 GPR42O15529 346 aa2.17□□□□□ -2.06
PRPF39-208ENST00000554785 B4GALT4O60513 344 aa2.17□□□□□ -2.06
PRPF39-208ENST00000554785 RFPL3O75679 317 aa2.17□□□□□ -2.06
PRPF39-208ENST00000554785 KIAA2012Q0VF49 1180 aa2.17□□□□□ -2.06
PRPF39-208ENST00000554785 PABPC4Q13310 644 aaKnown RBP eCLIP2.17□□□□□ -2.06
PRPF39-208ENST00000554785 PAN2Q504Q3 1202 aaKnown RBP2.17□□□□□ -2.06
PRPF39-208ENST00000554785 FNDC3BQ53EP0 1204 aaKnown RBP2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms