RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 ZSCAN1Q8NBB4 408 aa8.62□□□□□ -1.03
ATXN3-219ENST00000553488 GDPD5Q8WTR4 605 aa8.62□□□□□ -1.03
ATXN3-219ENST00000553488 PPP1R13LQ8WUF5 828 aa8.62□□□□□ -1.03
ATXN3-219ENST00000553488 CHURC1Q8WUH1 139 aa8.62□□□□□ -1.03
ATXN3-219ENST00000553488 CTAGE1Q96RT6 745 aa8.62□□□□□ -1.03
ATXN3-219ENST00000553488 MTG1Q9BT17 334 aaPredicted RBP8.62□□□□□ -1.03
ATXN3-219ENST00000553488 RANBP17Q9H2T7 1088 aaKnown RBP8.62□□□□□ -1.03
ATXN3-219ENST00000553488 ZNF287Q9HBT7 754 aa8.62□□□□□ -1.03
ATXN3-219ENST00000553488 ECHDC1Q9NTX5 307 aa8.62□□□□□ -1.03
ATXN3-219ENST00000553488 STK17AQ9UEE5 414 aa8.62□□□□□ -1.03
ATXN3-219ENST00000553488 DDX19BQ9UMR2 479 aa8.62□□□□□ -1.03
ATXN3-219ENST00000553488 KIAA1024Q9UPX6 916 aa8.62□□□□□ -1.03
ATXN3-219ENST00000553488 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.62□□□□□ -1.03
ATXN3-219ENST00000553488 LOC102724159A0A0B4J2E5 919 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 A0A1B0GTH6 734 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 CDC14CA4D256 554 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 PI4K2BG5E9Z4 385 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 NFIBO00712 420 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 RNF113AO15541 343 aaKnown RBP8.61□□□□□ -1.03
ATXN3-219ENST00000553488 BAIAP3O94812 1187 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 F11P03951 625 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 ICAM1P05362 532 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 MYL3P08590 195 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 EDNRBP24530 442 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 CPT1AP50416 773 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 EPHA4P54764 986 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 WDR5P61964 334 aaKnown RBP8.61□□□□□ -1.03
ATXN3-219ENST00000553488 TFAP4Q01664 338 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 UBAP2LQ14157 1087 aaKnown RBP8.61□□□□□ -1.03
ATXN3-219ENST00000553488 PWP2Q15269 919 aaKnown RBP8.61□□□□□ -1.03
ATXN3-219ENST00000553488 TSHZ3Q63HK5 1081 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 TMEM214Q6NUQ4 689 aaKnown RBP8.61□□□□□ -1.03
ATXN3-219ENST00000553488 NFRKBQ6P4R8 1299 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 SLC30A10Q6XR72 485 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 CHMP4CQ96CF2 233 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 WDR11Q9BZH6 1224 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 LRRCC1Q9C099 1032 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 IL17RBQ9NRM6 502 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 CCPG1Q9ULG6 757 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 USP3Q9Y6I4 520 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 COL4A6Q14031 1691 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 LAMA4Q16363 1823 aa8.61□□□□□ -1.03
ATXN3-219ENST00000553488 MYO15AQ9UKN7 3530 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 A6NJY4 79 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 PATL2C9JE40 543 aaKnown RBP8.6□□□□□ -1.03
ATXN3-219ENST00000553488 RBAK-RBAKDNI3L0D1 243 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 CDK2AP1O14519 115 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 NMT2O60551 498 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 ZFYP08048 801 aaPredicted RBP8.6□□□□□ -1.03
ATXN3-219ENST00000553488 DEFB103AP81534 67 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 PTPN11Q06124 597 aaPredicted RBP8.6□□□□□ -1.03
ATXN3-219ENST00000553488 PDE4BQ07343 736 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 PPARAQ07869 468 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 RBL2Q08999 1139 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 IKQ13123 557 aaPredicted RBP8.6□□□□□ -1.03
ATXN3-219ENST00000553488 BAATQ14032 418 aaPredicted RBP8.6□□□□□ -1.03
ATXN3-219ENST00000553488 TCTN1Q2MV58 587 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 RCSD1Q6JBY9 416 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 BTNL9Q6UXG8 535 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 TMCO2Q7Z6W1 182 aaPredicted RBP8.6□□□□□ -1.03
ATXN3-219ENST00000553488 OR6J1Q8NGC5 347 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 DHX38Q92620 1227 aaKnown RBP8.6□□□□□ -1.03
ATXN3-219ENST00000553488 COPS5Q92905 334 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 CNTNAP3BQ96NU0 1288 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 SEC62Q99442 399 aaKnown RBP8.6□□□□□ -1.03
ATXN3-219ENST00000553488 CNTNAP3Q9BZ76 1288 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 ZNF358Q9NW07 568 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 LMCD1Q9NZU5 365 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 TFIP11Q9UBB9 837 aaKnown RBP8.6□□□□□ -1.03
ATXN3-219ENST00000553488 ISY1Q9ULR0 285 aaKnown RBP8.6□□□□□ -1.03
ATXN3-219ENST00000553488 MAFBQ9Y5Q3 323 aaPredicted RBP8.6□□□□□ -1.03
ATXN3-219ENST00000553488 TECTAO75443 2155 aa8.6□□□□□ -1.03
ATXN3-219ENST00000553488 CACNA1HO95180 2353 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 VPS13AQ96RL7 3174 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.59□□□□□ -1.03
ATXN3-219ENST00000553488 PALM3A6NDB9 673 aaPredicted RBP8.59□□□□□ -1.03
ATXN3-219ENST00000553488 NKRFO15226 690 aaKnown RBP eCLIP8.59□□□□□ -1.03
ATXN3-219ENST00000553488 ARIH2O95376 493 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 CXCL10P02778 98 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 PHKA2P46019 1235 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 HNRNPUQ00839 825 aaKnown RBP eCLIP8.59□□□□□ -1.03
ATXN3-219ENST00000553488 FOXK2Q01167 660 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 BFSP2Q13515 415 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 PPP2R5BQ15173 497 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 LRRFIP1Q32MZ4 808 aaKnown RBP8.59□□□□□ -1.03
ATXN3-219ENST00000553488 FAM47CQ5HY64 1035 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 TTBK2Q6IQ55 1244 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 SESTD1Q86VW0 696 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 TRIM50Q86XT4 487 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.59□□□□□ -1.03
ATXN3-219ENST00000553488 AFAP1L1Q8TED9 768 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 CLEC4DQ8WXI8 215 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 UBE2ZQ9H832 354 aaPredicted RBP8.59□□□□□ -1.03
ATXN3-219ENST00000553488 ADD3Q9UEY8 706 aaKnown RBP8.59□□□□□ -1.03
ATXN3-219ENST00000553488 STX8Q9UNK0 236 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 ZDBF2Q9HCK1 2354 aa8.59□□□□□ -1.03
ATXN3-219ENST00000553488 RAD50Q92878 1312 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 DMDP11532 3685 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 LINC01553A4QN01 128 aa8.58□□□□□ -1.04
ATXN3-219ENST00000553488 PRR33A8MZF0 331 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms