RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 CRIPAKQ8N1N5 446 aa13.59□□□□□ -0.23
CKAP4-202ENST00000552828 C11orf84Q9BUA3 381 aaPredicted RBP13.59□□□□□ -0.23
CKAP4-202ENST00000552828 SMARCAD1Q9H4L7 1026 aa13.59□□□□□ -0.23
CKAP4-202ENST00000552828 TUBE1Q9UJT0 475 aa13.59□□□□□ -0.23
CKAP4-202ENST00000552828 FAM50BQ9Y247 325 aa13.59□□□□□ -0.23
CKAP4-202ENST00000552828 RBM8AQ9Y5S9 174 aaKnown RBP13.59□□□□□ -0.23
CKAP4-202ENST00000552828 SH2B2O14492 632 aaPredicted RBP13.58□□□□□ -0.24
CKAP4-202ENST00000552828 PRC1O43663 620 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 CALM1P0DP23 149 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 CALM2P0DP24 149 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 CALM3P0DP25 149 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 SSTR3P32745 418 aaPredicted RBP13.58□□□□□ -0.24
CKAP4-202ENST00000552828 MCM5P33992 734 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 ZP2Q05996 745 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 MTMR1Q13613 665 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 TSHZ1Q6ZSZ6 1077 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 TEX2Q8IWB9 1127 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 TMEM87BQ96K49 555 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 PLVAPQ9BX97 442 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 JADE2Q9NQC1 790 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 SQORQ9Y6N5 450 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 ADGRA3Q8IWK6 1321 aa13.58□□□□□ -0.24
CKAP4-202ENST00000552828 MUC6Q6W4X9 2439 aa13.57□□□□□ -0.24
CKAP4-202ENST00000552828 RRN3P2A6NIE6 340 aa13.57□□□□□ -0.24
CKAP4-202ENST00000552828 GRM6O15303 877 aa13.57□□□□□ -0.24
CKAP4-202ENST00000552828 DGKIO75912 1065 aa13.57□□□□□ -0.24
CKAP4-202ENST00000552828 CTNNB1P35222 781 aa13.57□□□□□ -0.24
CKAP4-202ENST00000552828 COL9A3Q14050 684 aaPredicted RBP13.57□□□□□ -0.24
CKAP4-202ENST00000552828 ADHFE1Q8IWW8 467 aa13.57□□□□□ -0.24
CKAP4-202ENST00000552828 DNAJB3Q8WWF6 145 aa13.57□□□□□ -0.24
CKAP4-202ENST00000552828 GLG1Q92896 1179 aa13.57□□□□□ -0.24
CKAP4-202ENST00000552828 PCYT2Q99447 389 aa13.57□□□□□ -0.24
CKAP4-202ENST00000552828 CCDC69A6NI79 296 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 SPDYE3A6NKU9 549 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 DCXO43602 365 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 INSRRP14616 1297 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 MARK3P27448 753 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 MRPS6P82932 125 aaKnown RBP13.56□□□□□ -0.24
CKAP4-202ENST00000552828 HYAL1Q12794 435 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 CAMK1Q14012 370 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 SMAD2Q15796 467 aaKnown RBP13.56□□□□□ -0.24
CKAP4-202ENST00000552828 RNF20Q5VTR2 975 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 NFXL1Q6ZNB6 911 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 FAM43BQ6ZT52 329 aaPredicted RBP13.56□□□□□ -0.24
CKAP4-202ENST00000552828 TMTC3Q6ZXV5 915 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 RTN4RL1Q86UN2 441 aaPredicted RBP13.56□□□□□ -0.24
CKAP4-202ENST00000552828 CMTR1Q8N1G2 835 aaKnown RBP13.56□□□□□ -0.24
CKAP4-202ENST00000552828 FANCBQ8NB91 859 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 LINC01599Q8WXQ3 324 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 FTHL17Q9BXU8 183 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 AGO3Q9H9G7 860 aaKnown RBP13.56□□□□□ -0.24
CKAP4-202ENST00000552828 JPH1Q9HDC5 661 aaPredicted RBP13.56□□□□□ -0.24
CKAP4-202ENST00000552828 CLDND1Q9NY35 253 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 PCDHA6Q9UN73 950 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 PCDHA8Q9Y5H6 950 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 CDY2AQ9Y6F7 541 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 TRIOO75962 3097 aa13.56□□□□□ -0.24
CKAP4-202ENST00000552828 SLC27A2O14975 620 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 REC8O95072 547 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 MMP1P03956 469 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 BTG3Q14201 252 aaPredicted RBP13.55□□□□□ -0.24
CKAP4-202ENST00000552828 NECTIN1Q15223 517 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 UBE2SQ16763 222 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 NAALADL2Q58DX5 795 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 IER5Q5VY09 327 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 CREB3L3Q68CJ9 461 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 PLPPR4Q7Z2D5 763 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 SGMS1Q86VZ5 419 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 TNPO1Q92973 898 aaKnown RBP13.55□□□□□ -0.24
CKAP4-202ENST00000552828 P2RX5Q93086 422 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 KCNH7Q9NS40 1196 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 SLC9A2Q9UBY0 812 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 PLAGL2Q9UPG8 496 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 PCDHA2Q9Y5H9 948 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 SLC12A7Q9Y666 1083 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 NFASCO94856 1347 aa13.55□□□□□ -0.24
CKAP4-202ENST00000552828 C5orf42Q9H799 3197 aa13.54□□□□□ -0.24
CKAP4-202ENST00000552828 RXRAP19793 462 aa13.54□□□□□ -0.24
CKAP4-202ENST00000552828 CD52P31358 61 aa13.54□□□□□ -0.24
CKAP4-202ENST00000552828 DLX2Q07687 328 aaPredicted RBP13.54□□□□□ -0.24
CKAP4-202ENST00000552828 CMTR2Q8IYT2 770 aaKnown RBP13.54□□□□□ -0.24
CKAP4-202ENST00000552828 NME8Q8N427 588 aa13.54□□□□□ -0.24
CKAP4-202ENST00000552828 MXRA8Q9BRK3 442 aa13.54□□□□□ -0.24
CKAP4-202ENST00000552828 AZI2Q9H6S1 392 aa13.54□□□□□ -0.24
CKAP4-202ENST00000552828 PKD2L1Q9P0L9 805 aa13.54□□□□□ -0.24
CKAP4-202ENST00000552828 IGSF9BQ9UPX0 1349 aa13.54□□□□□ -0.24
CKAP4-202ENST00000552828 KDM3AQ9Y4C1 1321 aa13.54□□□□□ -0.24
CKAP4-202ENST00000552828 RALGAPA2Q2PPJ7 1873 aa13.54□□□□□ -0.24
CKAP4-202ENST00000552828 DOCK5Q9H7D0 1870 aa13.53□□□□□ -0.24
CKAP4-202ENST00000552828 TTC3P53804 2025 aa13.53□□□□□ -0.24
CKAP4-202ENST00000552828 hCG_1642624A0A1W2PR95 340 aa13.53□□□□□ -0.24
CKAP4-202ENST00000552828 ATG7O95352 703 aa13.53□□□□□ -0.24
CKAP4-202ENST00000552828 ACTR2P61160 394 aa13.53□□□□□ -0.24
CKAP4-202ENST00000552828 IGBP1P78318 339 aa13.53□□□□□ -0.24
CKAP4-202ENST00000552828 ADAM15Q13444 863 aa13.53□□□□□ -0.24
CKAP4-202ENST00000552828 PLCB4Q15147 1175 aa13.53□□□□□ -0.24
CKAP4-202ENST00000552828 EP400NLQ6ZTU2 488 aa13.53□□□□□ -0.24
CKAP4-202ENST00000552828 HEATR3Q7Z4Q2 680 aa13.53□□□□□ -0.24
CKAP4-202ENST00000552828 NPAS4Q8IUM7 802 aa13.53□□□□□ -0.24
CKAP4-202ENST00000552828 CCDC82Q8N4S0 544 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms