RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 HOXD8P13378 290 aaPredicted RBP12.24□□□□□ -0.45
VPS29-208ENST00000550267 MX1P20591 662 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 MMP16P51512 607 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 PLCB2Q00722 1185 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 DLX2Q07687 328 aaPredicted RBP12.24□□□□□ -0.45
VPS29-208ENST00000550267 COL4A6Q14031 1691 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 SMAD2Q15796 467 aaKnown RBP12.24□□□□□ -0.45
VPS29-208ENST00000550267 HSDL1Q3SXM5 330 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 MCF2L2Q86YR7 1114 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 ADGRF4Q8IZF3 695 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 PRSS33Q8NF86 280 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 SEPT8Q92599 483 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 MFSD14AQ96MC6 490 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 MAF1Q9H063 256 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 PXMP2Q9NR77 195 aa12.24□□□□□ -0.45
VPS29-208ENST00000550267 C17orf102A2RUQ5 167 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 PPFIA4O75335 1185 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 GGPS1O95749 300 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 CFBP00751 764 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 CTNNB1P35222 781 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 HYAL1Q12794 435 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 QRICH1Q2TAL8 776 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 HERC4Q5GLZ8 1057 aaPredicted RBP12.23□□□□□ -0.45
VPS29-208ENST00000550267 MYSM1Q5VVJ2 828 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 RNF135Q8IUD6 432 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 TBC1D10CQ8IV04 446 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 ATP6V0A1Q93050 837 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 FAM227BQ96M60 508 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 SPATA33Q96N06 139 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 C16orf70Q9BSU1 422 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 IFIH1Q9BYX4 1025 aaKnown RBP12.23□□□□□ -0.45
VPS29-208ENST00000550267 HELLSQ9NRZ9 838 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 RCAN3Q9UKA8 241 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 MRPL11Q9Y3B7 192 aaKnown RBP12.23□□□□□ -0.45
VPS29-208ENST00000550267 KIAA1217Q5T5P2 1943 aa12.23□□□□□ -0.45
VPS29-208ENST00000550267 MICAL3Q7RTP6 2002 aa12.22□□□□□ -0.45
VPS29-208ENST00000550267 A0A0D9SFI3 127 aa12.22□□□□□ -0.45
VPS29-208ENST00000550267 GRM6O15303 877 aa12.22□□□□□ -0.45
VPS29-208ENST00000550267 TREHO43280 583 aa12.22□□□□□ -0.45
VPS29-208ENST00000550267 CSPG5O95196 566 aa12.22□□□□□ -0.45
VPS29-208ENST00000550267 HSPD1P10809 573 aaKnown RBP12.22□□□□□ -0.45
VPS29-208ENST00000550267 MYCLP12524 364 aaPredicted RBP12.22□□□□□ -0.45
VPS29-208ENST00000550267 CD46P15529 392 aa12.22□□□□□ -0.45
VPS29-208ENST00000550267 CELF3Q5SZQ8 465 aaKnown RBP12.22□□□□□ -0.45
VPS29-208ENST00000550267 MFSD6Q6ZSS7 791 aa12.22□□□□□ -0.45
VPS29-208ENST00000550267 FIBCD1Q8N539 461 aa12.22□□□□□ -0.45
VPS29-208ENST00000550267 PNMA1Q8ND90 353 aa12.22□□□□□ -0.45
VPS29-208ENST00000550267 SNIP1Q8TAD8 396 aaKnown RBP12.22□□□□□ -0.45
VPS29-208ENST00000550267 POP1Q99575 1024 aaKnown RBP12.22□□□□□ -0.45
VPS29-208ENST00000550267 VAT1LQ9HCJ6 419 aa12.22□□□□□ -0.45
VPS29-208ENST00000550267 BRWD1Q9NSI6 2320 aa12.22□□□□□ -0.45
VPS29-208ENST00000550267 NEDD4P46934 1319 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 SALL3Q9BXA9 1300 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 STXBP3O00186 592 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 OPLAHO14841 1288 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 LINC01565O15544 149 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 NCK2O43639 380 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 DHX16O60231 1041 aaKnown RBP12.21□□□□□ -0.45
VPS29-208ENST00000550267 TBX10O75333 385 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 SMIM10L2AP0DMW4 78 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 SMIM10L2BP0DMW5 78 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 HOXC8P31273 242 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 GTF2F1P35269 517 aaKnown RBP eCLIP12.21□□□□□ -0.45
VPS29-208ENST00000550267 HSD17B4P51659 736 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 SP2Q02086 613 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 MCMDC2Q4G0Z9 681 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 ZNF589Q86UQ0 364 aaPredicted RBP12.21□□□□□ -0.45
VPS29-208ENST00000550267 EDAQ92838 391 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 GPKOWQ92917 476 aaPredicted RBP eCLIP12.21□□□□□ -0.45
VPS29-208ENST00000550267 EVI5LQ96CN4 794 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 IL17RAQ96F46 866 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 PDCD2LQ9BRP1 358 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 LMAN2LQ9H0V9 348 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 RNPEPQ9H4A4 650 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 IGFLR1Q9H665 355 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 JMJD4Q9H9V9 463 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 PIEZO1Q92508 2521 aa12.21□□□□□ -0.45
VPS29-208ENST00000550267 ZMYM6O95789 1325 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 C5orf67F2Z3F1 127 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 H3BRB1 525 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 LGALS2P05162 132 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 LINC00271P0C7V0 271 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 PCP11498 1178 aaKnown RBP12.2□□□□□ -0.46
VPS29-208ENST00000550267 UBA1P22314 1058 aaKnown RBP12.2□□□□□ -0.46
VPS29-208ENST00000550267 BMPR1AP36894 532 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 SMAD4Q13485 552 aaKnown RBP12.2□□□□□ -0.46
VPS29-208ENST00000550267 ASPRV1Q53RT3 343 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 KCNV1Q6PIU1 500 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 DGKHQ86XP1 1220 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 IL31RAQ8NI17 732 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 ESR2Q92731 530 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 C11orf84Q9BUA3 381 aaPredicted RBP12.2□□□□□ -0.46
VPS29-208ENST00000550267 TUT1Q9H6E5 874 aaKnown RBP12.2□□□□□ -0.46
VPS29-208ENST00000550267 BCAS3Q9H6U6 928 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 KAT14Q9H8E8 782 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 MLXIPQ9HAP2 919 aa12.2□□□□□ -0.46
VPS29-208ENST00000550267 RALGAPA2Q2PPJ7 1873 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 NLRC5Q86WI3 1866 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 TMEM221A6NGB7 291 aa12.19□□□□□ -0.46
VPS29-208ENST00000550267 M0R296 226 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms