RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 PCYT2Q99447 389 aa29.33■■■□□ 2.29
CPSF6-205ENST00000550075 RNPEPQ9H4A4 650 aa29.33■■■□□ 2.29
CPSF6-205ENST00000550075 TRPC6Q9Y210 931 aa29.33■■■□□ 2.29
CPSF6-205ENST00000550075 SAMM50Q9Y512 469 aa29.33■■■□□ 2.29
CPSF6-205ENST00000550075 PCDHA10Q9Y5I2 948 aa29.33■■■□□ 2.29
CPSF6-205ENST00000550075 SFNP31947 248 aa29.32■■■□□ 2.28
CPSF6-205ENST00000550075 RFC2P35250 354 aa29.32■■■□□ 2.28
CPSF6-205ENST00000550075 JAK3P52333 1124 aa29.32■■■□□ 2.28
CPSF6-205ENST00000550075 SERINC5Q86VE9 423 aa29.32■■■□□ 2.28
CPSF6-205ENST00000550075 FOXP1Q9H334 677 aaPredicted RBP29.32■■■□□ 2.28
CPSF6-205ENST00000550075 IL23AQ9NPF7 189 aa29.32■■■□□ 2.28
CPSF6-205ENST00000550075 ZNF302Q9NR11 478 aa29.32■■■□□ 2.28
CPSF6-205ENST00000550075 SETD4Q9NVD3 440 aa29.32■■■□□ 2.28
CPSF6-205ENST00000550075 IGKV6D-21A0A0A0MT36 114 aa29.31■■■□□ 2.28
CPSF6-205ENST00000550075 SLC37A4O43826 429 aa29.31■■■□□ 2.28
CPSF6-205ENST00000550075 MARCH6O60337 910 aa29.31■■■□□ 2.28
CPSF6-205ENST00000550075 EARS2Q5JPH6 523 aaKnown RBP29.31■■■□□ 2.28
CPSF6-205ENST00000550075 PDXDC2PQ6P474 469 aa29.31■■■□□ 2.28
CPSF6-205ENST00000550075 RPUSD2Q8IZ73 545 aaKnown RBP29.31■■■□□ 2.28
CPSF6-205ENST00000550075 RDM1Q8NG50 284 aa29.31■■■□□ 2.28
CPSF6-205ENST00000550075 ETNPPLQ8TBG4 499 aa29.31■■■□□ 2.28
CPSF6-205ENST00000550075 LMBR1Q8WVP7 490 aa29.31■■■□□ 2.28
CPSF6-205ENST00000550075 FAM20AQ96MK3 541 aa29.31■■■□□ 2.28
CPSF6-205ENST00000550075 SMC3Q9UQE7 1217 aa29.31■■■□□ 2.28
CPSF6-205ENST00000550075 MYH9P35579 1960 aaKnown RBP29.3■■■□□ 2.28
CPSF6-205ENST00000550075 FAM205CA6NFA0 338 aa29.3■■■□□ 2.28
CPSF6-205ENST00000550075 RRN3P2A6NIE6 340 aa29.3■■■□□ 2.28
CPSF6-205ENST00000550075 TBX3O15119 743 aa29.3■■■□□ 2.28
CPSF6-205ENST00000550075 PFKMP08237 780 aa29.3■■■□□ 2.28
CPSF6-205ENST00000550075 SELPP16109 830 aa29.3■■■□□ 2.28
CPSF6-205ENST00000550075 ZNF200P98182 395 aaPredicted RBP29.3■■■□□ 2.28
CPSF6-205ENST00000550075 GRIK4Q16099 956 aa29.3■■■□□ 2.28
CPSF6-205ENST00000550075 CCDC60Q8IWA6 550 aaPredicted RBP29.3■■■□□ 2.28
CPSF6-205ENST00000550075 DHX38Q92620 1227 aaKnown RBP29.3■■■□□ 2.28
CPSF6-205ENST00000550075 DISC1Q9NRI5 854 aa29.3■■■□□ 2.28
CPSF6-205ENST00000550075 CHMP2AO43633 222 aa29.29■■■□□ 2.28
CPSF6-205ENST00000550075 PSMD10O75832 226 aa29.29■■■□□ 2.28
CPSF6-205ENST00000550075 PARNO95453 639 aaKnown RBP29.29■■■□□ 2.28
CPSF6-205ENST00000550075 PLCB4Q15147 1175 aa29.29■■■□□ 2.28
CPSF6-205ENST00000550075 SWSAP1Q6NVH7 229 aa29.29■■■□□ 2.28
CPSF6-205ENST00000550075 SCLYQ96I15 445 aa29.29■■■□□ 2.28
CPSF6-205ENST00000550075 RNPC3Q96LT9 517 aaKnown RBP29.29■■■□□ 2.28
CPSF6-205ENST00000550075 KCNMB3Q9NPA1 279 aa29.29■■■□□ 2.28
CPSF6-205ENST00000550075 TREHO43280 583 aa29.28■■■□□ 2.28
CPSF6-205ENST00000550075 CAND2O75155 1236 aa29.28■■■□□ 2.28
CPSF6-205ENST00000550075 BAG4O95429 457 aaKnown RBP29.28■■■□□ 2.28
CPSF6-205ENST00000550075 EPHB4P54760 987 aa29.28■■■□□ 2.28
CPSF6-205ENST00000550075 HIC1Q14526 733 aa29.28■■■□□ 2.28
CPSF6-205ENST00000550075 SHHQ15465 462 aa29.28■■■□□ 2.28
CPSF6-205ENST00000550075 LRIT3Q3SXY7 679 aa29.28■■■□□ 2.28
CPSF6-205ENST00000550075 LRRC8DQ7L1W4 858 aa29.28■■■□□ 2.28
CPSF6-205ENST00000550075 MTIF3Q9H2K0 278 aaKnown RBP29.28■■■□□ 2.28
CPSF6-205ENST00000550075 UNC45AQ9H3U1 944 aa29.28■■■□□ 2.28
CPSF6-205ENST00000550075 TUBE1Q9UJT0 475 aa29.28■■■□□ 2.28
CPSF6-205ENST00000550075 POTEB3A0JP26 581 aa29.27■■■□□ 2.28
CPSF6-205ENST00000550075 IQCF3P0C7M6 154 aa29.27■■■□□ 2.28
CPSF6-205ENST00000550075 CKBP12277 381 aa29.27■■■□□ 2.28
CPSF6-205ENST00000550075 GJB2P29033 226 aa29.27■■■□□ 2.28
CPSF6-205ENST00000550075 C9orf50Q5SZB4 431 aa29.27■■■□□ 2.28
CPSF6-205ENST00000550075 TAF2Q6P1X5 1199 aa29.27■■■□□ 2.28
CPSF6-205ENST00000550075 POTEBQ6S5H4 581 aa29.27■■■□□ 2.28
CPSF6-205ENST00000550075 MIER3Q7Z3K6 550 aa29.27■■■□□ 2.28
CPSF6-205ENST00000550075 POTEDQ86YR6 584 aa29.27■■■□□ 2.28
CPSF6-205ENST00000550075 CKAP2LQ8IYA6 745 aa29.27■■■□□ 2.28
CPSF6-205ENST00000550075 SLFN12Q8IYM2 578 aa29.27■■■□□ 2.28
CPSF6-205ENST00000550075 ATP8B4Q8TF62 1192 aa29.27■■■□□ 2.28
CPSF6-205ENST00000550075 FAM167AQ96KS9 214 aa29.27■■■□□ 2.28
CPSF6-205ENST00000550075 IGSF9BQ9UPX0 1349 aa29.26■■■□□ 2.27
CPSF6-205ENST00000550075 HBP1O60381 514 aa29.26■■■□□ 2.27
CPSF6-205ENST00000550075 RPLP2P05387 115 aaKnown RBP29.26■■■□□ 2.27
CPSF6-205ENST00000550075 INSRRP14616 1297 aa29.26■■■□□ 2.27
CPSF6-205ENST00000550075 ADAM17P78536 824 aa29.26■■■□□ 2.27
CPSF6-205ENST00000550075 TRIM71Q2Q1W2 868 aaKnown RBP29.26■■■□□ 2.27
CPSF6-205ENST00000550075 NOSTRINQ8IVI9 506 aa29.26■■■□□ 2.27
CPSF6-205ENST00000550075 BUD13Q9BRD0 619 aaKnown RBP eCLIP29.26■■■□□ 2.277e-7■□□□□ 9.9
CPSF6-205ENST00000550075 NOL7Q9UMY1 257 aaKnown RBP29.26■■■□□ 2.27
CPSF6-205ENST00000550075 MAFBQ9Y5Q3 323 aaPredicted RBP29.26■■■□□ 2.27
CPSF6-205ENST00000550075 COL1A2P08123 1366 aa29.26■■■□□ 2.27
CPSF6-205ENST00000550075 NEMFO60524 1076 aa29.25■■■□□ 2.27
CPSF6-205ENST00000550075 ACRP10323 421 aa29.25■■■□□ 2.27
CPSF6-205ENST00000550075 THPOP40225 353 aa29.25■■■□□ 2.27
CPSF6-205ENST00000550075 IGBP1P78318 339 aa29.25■■■□□ 2.27
CPSF6-205ENST00000550075 TMEM240Q5SV17 173 aa29.25■■■□□ 2.27
CPSF6-205ENST00000550075 RSPH3Q86UC2 560 aa29.25■■■□□ 2.27
CPSF6-205ENST00000550075 GJA10Q969M2 543 aa29.25■■■□□ 2.27
CPSF6-205ENST00000550075 GABBR1Q9UBS5 961 aa29.25■■■□□ 2.27
CPSF6-205ENST00000550075 WDR81Q562E7 1941 aa29.25■■■□□ 2.27
CPSF6-205ENST00000550075 SCN5AQ14524 2016 aa29.25■■■□□ 2.27
CPSF6-205ENST00000550075 H3BQV1 296 aa29.24■■■□□ 2.27
CPSF6-205ENST00000550075 FGBP02675 491 aa29.24■■■□□ 2.27
CPSF6-205ENST00000550075 ORC2Q13416 577 aaPredicted RBP29.24■■■□□ 2.27
CPSF6-205ENST00000550075 MBLAC1A4D2B0 266 aaPredicted RBP29.23■■■□□ 2.27
CPSF6-205ENST00000550075 ACTN1P12814 892 aa29.23■■■□□ 2.27
CPSF6-205ENST00000550075 PPP2R5CQ13362 524 aa29.23■■■□□ 2.27
CPSF6-205ENST00000550075 CUL4AQ13619 759 aa29.23■■■□□ 2.27
CPSF6-205ENST00000550075 CALCRLQ16602 461 aa29.23■■■□□ 2.27
CPSF6-205ENST00000550075 B3GNT9Q6UX72 402 aa29.23■■■□□ 2.27
CPSF6-205ENST00000550075 ZNF365Q70YC5 407 aa29.23■■■□□ 2.27
CPSF6-205ENST00000550075 DEFB128Q7Z7B8 93 aa29.23■■■□□ 2.27
CPSF6-205ENST00000550075 BBXQ8WY36 941 aaPredicted RBP29.23■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms