RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 PAMP19021 973 aa5.77□□□□□ -1.49
VPS29-205ENST00000548539 EVA1CP58658 441 aa5.77□□□□□ -1.49
VPS29-205ENST00000548539 GUCY1A3Q02108 690 aa5.77□□□□□ -1.49
VPS29-205ENST00000548539 PCBP1Q15365 356 aaKnown RBP eCLIP5.77□□□□□ -1.49
VPS29-205ENST00000548539 INF2Q27J81 1249 aa5.77□□□□□ -1.49
VPS29-205ENST00000548539 ACBD5Q5T8D3 534 aaPredicted RBP5.77□□□□□ -1.49
VPS29-205ENST00000548539 MBLAC2Q68D91 279 aa5.77□□□□□ -1.49
VPS29-205ENST00000548539 RNF180Q86T96 592 aa5.77□□□□□ -1.49
VPS29-205ENST00000548539 STK32CQ86UX6 486 aa5.77□□□□□ -1.49
VPS29-205ENST00000548539 RPUSD2Q8IZ73 545 aaKnown RBP5.77□□□□□ -1.49
VPS29-205ENST00000548539 LEO1Q8WVC0 666 aaPredicted RBP5.77□□□□□ -1.49
VPS29-205ENST00000548539 TMX1Q9H3N1 280 aa5.77□□□□□ -1.49
VPS29-205ENST00000548539 INTS7Q9NVH2 962 aaKnown RBP5.77□□□□□ -1.49
VPS29-205ENST00000548539 GULP1Q9UBP9 304 aa5.77□□□□□ -1.49
VPS29-205ENST00000548539 TCAF1Q9Y4C2 921 aa5.77□□□□□ -1.49
VPS29-205ENST00000548539 TCRBV16S1A1N1A0A5B0 115 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 FAM83GA6ND36 823 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 C9orf118A6NHY6 69 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 GPR42O15529 346 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 PPP1R11O60927 126 aaPredicted RBP5.76□□□□□ -1.49
VPS29-205ENST00000548539 ASLP04424 464 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 CYP1A1P04798 512 aaPredicted RBP5.76□□□□□ -1.49
VPS29-205ENST00000548539 JMJD7P0C870 316 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 SOX5P35711 763 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 IGFALSP35858 605 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 LTBRP36941 435 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 TGFB2P61812 414 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 E4F1Q66K89 784 aaPredicted RBP5.76□□□□□ -1.49
VPS29-205ENST00000548539 ZC3H18Q86VM9 953 aaKnown RBP5.76□□□□□ -1.49
VPS29-205ENST00000548539 IFNL3Q8IZI9 196 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 RCBTB1Q8NDN9 531 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 ZNF341Q9BYN7 854 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 SEMA4AQ9H3S1 761 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 JADE2Q9NQC1 790 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 C11orf21Q9P2W6 132 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 SIT1Q9Y3P8 196 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 PCDHA2Q9Y5H9 948 aa5.76□□□□□ -1.49
VPS29-205ENST00000548539 MUSKO15146 869 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 RAB11FIP3O75154 756 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 NTRK1P04629 796 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 SRGAP2CP0DJJ0 459 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 POU3F3P20264 500 aaPredicted RBP5.75□□□□□ -1.49
VPS29-205ENST00000548539 CDK11BP21127 795 aaKnown RBP5.75□□□□□ -1.49
VPS29-205ENST00000548539 SELENOPP49908 381 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 CDKN1CP49918 316 aaPredicted RBP5.75□□□□□ -1.49
VPS29-205ENST00000548539 GPR85P60893 370 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 KCNAB2Q13303 367 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 PRR31Q5SQ13 230 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 PIK3R6Q5UE93 754 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 PRAMEF18Q5VWM3 479 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 PKN3Q6P5Z2 889 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 STRA8Q7Z7C7 330 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 ZC3H7AQ8IWR0 971 aaKnown RBP5.75□□□□□ -1.49
VPS29-205ENST00000548539 FAM26EQ8N5C1 309 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 DNERQ8NFT8 737 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 IGDCC4Q8TDY8 1250 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 CHAMP1Q96JM3 812 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 GPR27Q9NS67 375 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 BTG4Q9NY30 223 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.75□□□□□ -1.49
VPS29-205ENST00000548539 PPARGC1AQ9UBK2 798 aaKnown RBP5.75□□□□□ -1.49
VPS29-205ENST00000548539 FBXL7Q9UJT9 491 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 MAPRE3Q9UPY8 281 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 NPFFR2Q9Y5X5 522 aa5.75□□□□□ -1.49
VPS29-205ENST00000548539 ITGA1P56199 1179 aa5.74□□□□□ -1.49
VPS29-205ENST00000548539 STRN3Q13033 797 aa5.74□□□□□ -1.49
VPS29-205ENST00000548539 FHL2Q14192 279 aa5.74□□□□□ -1.49
VPS29-205ENST00000548539 SEPT7Q16181 437 aaKnown RBP5.74□□□□□ -1.49
VPS29-205ENST00000548539 CFAP100Q494V2 611 aa5.74□□□□□ -1.49
VPS29-205ENST00000548539 CDCA2Q69YH5 1023 aaPredicted RBP5.74□□□□□ -1.49
VPS29-205ENST00000548539 IQCEQ6IPM2 695 aa5.74□□□□□ -1.49
VPS29-205ENST00000548539 ABHD17CQ6PCB6 329 aa5.74□□□□□ -1.49
VPS29-205ENST00000548539 RSPO2Q6UXX9 243 aaPredicted RBP5.74□□□□□ -1.49
VPS29-205ENST00000548539 LBX2Q6XYB7 198 aa5.74□□□□□ -1.49
VPS29-205ENST00000548539 DDX42Q86XP3 938 aaKnown RBP eCLIP5.74□□□□□ -1.49
VPS29-205ENST00000548539 PPM1KQ8N3J5 372 aa5.74□□□□□ -1.49
VPS29-205ENST00000548539 PRPF38AQ8NAV1 312 aaKnown RBP5.74□□□□□ -1.49
VPS29-205ENST00000548539 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.74□□□□□ -1.494e-11■■■■□ 26.4
VPS29-205ENST00000548539 MMP19Q99542 508 aa5.74□□□□□ -1.49
VPS29-205ENST00000548539 ZFYVE21Q9BQ24 234 aa5.74□□□□□ -1.49
VPS29-205ENST00000548539 ATP8A1Q9Y2Q0 1164 aa5.74□□□□□ -1.49
VPS29-205ENST00000548539 COQ6Q9Y2Z9 468 aa5.74□□□□□ -1.49
VPS29-205ENST00000548539 FUCA1P04066 466 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 APPP05067 770 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 FLT3P36888 993 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 PPP2CBP62714 309 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 PPP2CAP67775 309 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 RBM10P98175 930 aaKnown RBP5.73□□□□□ -1.49
VPS29-205ENST00000548539 FAM50AQ14320 339 aaKnown RBP5.73□□□□□ -1.49
VPS29-205ENST00000548539 TESK1Q15569 626 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 SPDYAQ5MJ70 313 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 ZCCHC8Q6NZY4 707 aaKnown RBP5.73□□□□□ -1.49
VPS29-205ENST00000548539 ARHGEF18Q6ZSZ5 1173 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 UBE2R2Q712K3 238 aaPredicted RBP5.73□□□□□ -1.49
VPS29-205ENST00000548539 DCP2Q8IU60 420 aaKnown RBP5.73□□□□□ -1.49
VPS29-205ENST00000548539 AHI1Q8N157 1196 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 IGSF22Q8N9C0 903 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 ATL2Q8NHH9 583 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 ALG1Q9BT22 464 aa5.73□□□□□ -1.49
VPS29-205ENST00000548539 MTFR1LQ9H019 292 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms