RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 MBLAC1A4D2B0 266 aaPredicted RBP14.69□□□□□ -0.06
VPS28-216ENST00000533806 DDX39AO00148 427 aaKnown RBP14.69□□□□□ -0.06
VPS28-216ENST00000533806 WNT7AO00755 349 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 CKBP12277 381 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 SLC26A2P50443 739 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 PPIGQ13427 754 aaKnown RBP eCLIP14.69□□□□□ -0.066e-8■□□□□ 10.8
VPS28-216ENST00000533806 BFSP2Q13515 415 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 CUL4AQ13619 759 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 TRIM29Q14134 588 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 PLCB4Q15147 1175 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 TMEM240Q5SV17 173 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 HAS1Q92839 578 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 GLG1Q92896 1179 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 ATP6V0A1Q93050 837 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 SCLYQ96I15 445 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 C8orf76Q96K31 380 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.69□□□□□ -0.064e-7■■■■□ 21.8
VPS28-216ENST00000533806 AZI2Q9H6S1 392 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 BRMS1Q9HCU9 246 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 IL23AQ9NPF7 189 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 NOD1Q9Y239 953 aa14.69□□□□□ -0.06
VPS28-216ENST00000533806 SOX1O00570 391 aaPredicted RBP14.68□□□□□ -0.06
VPS28-216ENST00000533806 TBX3O15119 743 aa14.68□□□□□ -0.06
VPS28-216ENST00000533806 INSRRP14616 1297 aa14.68□□□□□ -0.06
VPS28-216ENST00000533806 MARK3P27448 753 aa14.68□□□□□ -0.06
VPS28-216ENST00000533806 FOSBP53539 338 aa14.68□□□□□ -0.06
VPS28-216ENST00000533806 GUCY1B3Q02153 619 aa14.68□□□□□ -0.06
VPS28-216ENST00000533806 LRCH2Q5VUJ6 765 aa14.68□□□□□ -0.06
VPS28-216ENST00000533806 SWSAP1Q6NVH7 229 aa14.68□□□□□ -0.06
VPS28-216ENST00000533806 MIS18BP1Q6P0N0 1132 aa14.68□□□□□ -0.06
VPS28-216ENST00000533806 RPAINQ86UA6 219 aa14.68□□□□□ -0.06
VPS28-216ENST00000533806 FAM20AQ96MK3 541 aa14.68□□□□□ -0.06
VPS28-216ENST00000533806 NAP1L4Q99733 375 aaKnown RBP14.68□□□□□ -0.06
VPS28-216ENST00000533806 FOXP1Q9H334 677 aaPredicted RBP14.68□□□□□ -0.06
VPS28-216ENST00000533806 UNC45AQ9H3U1 944 aa14.68□□□□□ -0.06
VPS28-216ENST00000533806 PCDHA10Q9Y5I2 948 aa14.68□□□□□ -0.06
VPS28-216ENST00000533806 CCNT1O60563 726 aaKnown RBP14.67□□□□□ -0.06
VPS28-216ENST00000533806 ACRP10323 421 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 GNAT1P11488 350 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 SELPP16109 830 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 U2AF2P26368 475 aaKnown RBP eCLIP14.67□□□□□ -0.06
VPS28-216ENST00000533806 RFC2P35250 354 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 PPFIA1Q13136 1202 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 MBTPS1Q14703 1052 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 GRIK4Q16099 956 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 ZNF365Q70YC5 407 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 CCDC155Q8N6L0 562 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 FAM184AQ8NB25 1140 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 RETREG2Q8NC44 543 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 TEKT3Q9BXF9 490 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 ZNF302Q9NR11 478 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 DISC1Q9NRI5 854 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 VAV3Q9UKW4 847 aa14.67□□□□□ -0.06
VPS28-216ENST00000533806 IGSF9BQ9UPX0 1349 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 POTEB3A0JP26 581 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 RRN3P2A6NIE6 340 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 WDR64B1ANS9 1081 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 ZBTB42B2RXF5 422 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 KIF28PB7ZC32 967 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 ZNF862O60290 1169 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 GAS7O60861 476 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 CAND2O75155 1236 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 CXCL10P02778 98 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 PSAPP07602 524 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 SFNP31947 248 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 SPIRE1Q08AE8 756 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 PPP2R5CQ13362 524 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 SAFBQ15424 915 aaKnown RBP eCLIP14.66□□□□□ -0.06
VPS28-216ENST00000533806 ZNF618Q5T7W0 954 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 FAM160B1Q5W0V3 765 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 POTEBQ6S5H4 581 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 LRRC8DQ7L1W4 858 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 RPUSD2Q8IZ73 545 aaKnown RBP14.66□□□□□ -0.06
VPS28-216ENST00000533806 RDM1Q8NG50 284 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 ATP8B4Q8TF62 1192 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 HERVK_113Q902F9 699 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 MTMR9Q96QG7 549 aa14.66□□□□□ -0.06
VPS28-216ENST00000533806 BACH1O14867 736 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 HBP1O60381 514 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 NBNO60934 754 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 STBD1O95210 358 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 PARNO95453 639 aaKnown RBP14.65□□□□□ -0.06
VPS28-216ENST00000533806 FGBP02675 491 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 PFKMP08237 780 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 GJB2P29033 226 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 JAK3P52333 1124 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 UGCGQ16739 394 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 FAM26DQ5JW98 314 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 PDXDC2PQ6P474 469 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 PSRC1Q6PGN9 363 aaPredicted RBP14.65□□□□□ -0.06
VPS28-216ENST00000533806 RUFY4Q6ZNE9 571 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 POTEDQ86YR6 584 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 NOSTRINQ8IVI9 506 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 GABBR1Q9UBS5 961 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 TUBE1Q9UJT0 475 aa14.65□□□□□ -0.06
VPS28-216ENST00000533806 EML1O00423 815 aa14.64□□□□□ -0.07
VPS28-216ENST00000533806 TAF2Q6P1X5 1199 aa14.64□□□□□ -0.07
VPS28-216ENST00000533806 BBXQ8WY36 941 aaPredicted RBP14.64□□□□□ -0.07
VPS28-216ENST00000533806 TNPO1Q92973 898 aaKnown RBP14.64□□□□□ -0.07
VPS28-216ENST00000533806 ZBTB10Q96DT7 871 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms