RNA–Protein interactions for RNA: ENST00000533078.5

CMTM1-216, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-216ENST00000533078 LRFN2Q9ULH4 789 aa13.28□□□□□ -0.28
CMTM1-216ENST00000533078 CDY2AQ9Y6F7 541 aa13.28□□□□□ -0.28
CMTM1-216ENST00000533078 USP34Q70CQ2 3546 aa13.27□□□□□ -0.28
CMTM1-216ENST00000533078 PIK3CDO00329 1044 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 CYTH3O43739 400 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 DGKIO75912 1065 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 GNAQP50148 359 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 PTPN5P54829 565 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 IGBP1P78318 339 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 MRPS6P82932 125 aaKnown RBP13.27□□□□□ -0.29
CMTM1-216ENST00000533078 DLX2Q07687 328 aaPredicted RBP13.27□□□□□ -0.29
CMTM1-216ENST00000533078 MGAT3Q09327 533 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 PAK2Q13177 524 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 SEMA3FQ13275 785 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 RUFY4Q6ZNE9 571 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 NPAS4Q8IUM7 802 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 EDAQ92838 391 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 ZNF689Q96CS4 500 aaPredicted RBP13.27□□□□□ -0.29
CMTM1-216ENST00000533078 LZTS2Q9BRK4 669 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 SQORQ9Y6N5 450 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 TTC3P53804 2025 aa13.27□□□□□ -0.29
CMTM1-216ENST00000533078 SPDYE3A6NKU9 549 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 MAFGO15525 162 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 TBX10O75333 385 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 SRGAP2BP0DMP2 458 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 TROAPQ12815 778 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 ADAM15Q13444 863 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 MTMR1Q13613 665 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 SPOUT1Q5T280 376 aaKnown RBP13.26□□□□□ -0.29
CMTM1-216ENST00000533078 USP17L6PQ6QN14 398 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 CASC1Q6TDU7 716 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 FAM43BQ6ZT52 329 aaPredicted RBP13.26□□□□□ -0.29
CMTM1-216ENST00000533078 PBXIP1Q96AQ6 731 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 MAP3K14Q99558 947 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 SPZ1Q9BXG8 430 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 FAM49AQ9H0Q0 323 aaPredicted RBP13.26□□□□□ -0.29
CMTM1-216ENST00000533078 RC3H2Q9HBD1 1191 aaKnown RBP13.26□□□□□ -0.29
CMTM1-216ENST00000533078 AAASQ9NRG9 546 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 PLAGL2Q9UPG8 496 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 TRPC6Q9Y210 931 aa13.26□□□□□ -0.29
CMTM1-216ENST00000533078 SUPT16HQ9Y5B9 1047 aaKnown RBP13.26□□□□□ -0.29
CMTM1-216ENST00000533078 ZNF318Q5VUA4 2279 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 TMEM221A6NGB7 291 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 M0R296 226 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 DDAH1O94760 285 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 EYA4O95677 639 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 SMARCA1P28370 1054 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 CD52P31358 61 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 PAN2Q504Q3 1202 aaKnown RBP13.25□□□□□ -0.29
CMTM1-216ENST00000533078 ODR4Q5SWX8 454 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 NFXL1Q6ZNB6 911 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 BMP8AQ7Z5Y6 402 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 EFHBQ8N7U6 833 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 MICAL1Q8TDZ2 1067 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 POF1BQ8WVV4 589 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 PSTPIP2Q9H939 334 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 PCDHB12Q9Y5F1 795 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 TRPV2Q9Y5S1 764 aa13.25□□□□□ -0.29
CMTM1-216ENST00000533078 MRPL42Q9Y6G3 142 aaKnown RBP13.25□□□□□ -0.29
CMTM1-216ENST00000533078 ATG2AQ2TAZ0 1938 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 MBLAC1A4D2B0 266 aaPredicted RBP13.24□□□□□ -0.29
CMTM1-216ENST00000533078 LINC01565O15544 149 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 CYP21A2P08686 494 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 SCG2P13521 617 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 KCNA2P16389 499 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 IBSPP21815 317 aaPredicted RBP13.24□□□□□ -0.29
CMTM1-216ENST00000533078 GTF2F1P35269 517 aaKnown RBP eCLIP13.24□□□□□ -0.29
CMTM1-216ENST00000533078 NRIP1P48552 1158 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 COASYQ13057 564 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 SLC35G1Q2M3R5 365 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 TRIM67Q6ZTA4 783 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 KLHL23Q8NBE8 558 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 SMRP1Q8NCR6 262 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 SDF4Q9BRK5 362 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 IRF2BPLQ9H1B7 796 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 TLE6Q9H808 572 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 JPH1Q9HDC5 661 aaPredicted RBP13.24□□□□□ -0.29
CMTM1-216ENST00000533078 PKD2L1Q9P0L9 805 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 PCDHB7Q9Y5E2 793 aa13.24□□□□□ -0.29
CMTM1-216ENST00000533078 CCDC69A6NI79 296 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 E7EWF7 191 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 RBAK-RBAKDNI3L0D1 243 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 MEIS2O14770 477 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 ITGB1P05556 798 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 LINC00271P0C7V0 271 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 INSRRP14616 1297 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 UBE3AQ05086 875 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 RBM23Q86U06 439 aaKnown RBP13.23□□□□□ -0.29
CMTM1-216ENST00000533078 ZNF654Q8IZM8 581 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 TMTC2Q8N394 836 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 NME8Q8N427 588 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 SPPL3Q8TCT6 385 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 MSLNLQ96KJ4 702 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 CDCA3Q99618 268 aaPredicted RBP13.23□□□□□ -0.29
CMTM1-216ENST00000533078 PHF7Q9BWX1 381 aaPredicted RBP13.23□□□□□ -0.29
CMTM1-216ENST00000533078 SLC9A2Q9UBY0 812 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 PADI3Q9ULW8 664 aa13.23□□□□□ -0.29
CMTM1-216ENST00000533078 IGSF9BQ9UPX0 1349 aa13.22□□□□□ -0.29
CMTM1-216ENST00000533078 GSTTP1A0A1W2PQM5 241 aa13.22□□□□□ -0.29
CMTM1-216ENST00000533078 DENND3A2RUS2 1198 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms