RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SERINC5Q86VE9 423 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 LMBR1Q8WVP7 490 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 ATP6V0A1Q93050 837 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 IPO9Q96P70 1041 aaKnown RBP17.01■□□□□ 0.31
CPSF1-208ENST00000532560 TEKT3Q9BXF9 490 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 FOXP1Q9H334 677 aaPredicted RBP17.01■□□□□ 0.31
CPSF1-208ENST00000532560 KCNMB3Q9NPA1 279 aa17.01■□□□□ 0.31
CPSF1-208ENST00000532560 RANBP2P49792 3224 aaKnown RBP17.01■□□□□ 0.31
CPSF1-208ENST00000532560 WDR64B1ANS9 1081 aa17■□□□□ 0.31
CPSF1-208ENST00000532560 STAT5BP51692 787 aa17■□□□□ 0.31
CPSF1-208ENST00000532560 CCL23P55773 120 aa17■□□□□ 0.31
CPSF1-208ENST00000532560 ADAM17P78536 824 aa17■□□□□ 0.31
CPSF1-208ENST00000532560 PPFIA1Q13136 1202 aa17■□□□□ 0.31
CPSF1-208ENST00000532560 TRIM71Q2Q1W2 868 aaKnown RBP17■□□□□ 0.31
CPSF1-208ENST00000532560 FAM160B1Q5W0V3 765 aa17■□□□□ 0.31
CPSF1-208ENST00000532560 CCDC60Q8IWA6 550 aaPredicted RBP17■□□□□ 0.31
CPSF1-208ENST00000532560 SETD4Q9NVD3 440 aa17■□□□□ 0.31
CPSF1-208ENST00000532560 PCDHA10Q9Y5I2 948 aa17■□□□□ 0.31
CPSF1-208ENST00000532560 TRIP12Q14669 1992 aaPredicted RBP17■□□□□ 0.31
CPSF1-208ENST00000532560 IGSF9BQ9UPX0 1349 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 BACH1O14867 736 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 TBX3O15119 743 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 PSAPP07602 524 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 SFNP31947 248 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 RFC2P35250 354 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 JAK3P52333 1124 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 PLCB4Q15147 1175 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 GRIK4Q16099 956 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 PSRC1Q6PGN9 363 aaPredicted RBP16.99■□□□□ 0.31
CPSF1-208ENST00000532560 B3GNT9Q6UX72 402 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 RETREG2Q8NC44 543 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 RDM1Q8NG50 284 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 TNPO1Q92973 898 aaKnown RBP16.99■□□□□ 0.31
CPSF1-208ENST00000532560 WNT8BQ93098 351 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 FAM20AQ96MK3 541 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 IL23AQ9NPF7 189 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 ZNF302Q9NR11 478 aa16.99■□□□□ 0.31
CPSF1-208ENST00000532560 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.99■□□□□ 0.31
CPSF1-208ENST00000532560 MBLAC1A4D2B0 266 aaPredicted RBP16.98■□□□□ 0.31
CPSF1-208ENST00000532560 TREHO43280 583 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 CAND2O75155 1236 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 IQCF3P0C7M6 154 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 CKBP12277 381 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 SELPP16109 830 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 GJB2P29033 226 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 CUL4AQ13619 759 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 SHHQ15465 462 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 LRIT3Q3SXY7 679 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 C9orf50Q5SZB4 431 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 POTEDQ86YR6 584 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 ATP8B4Q8TF62 1192 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 GJA10Q969M2 543 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 SCLYQ96I15 445 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 UNC45AQ9H3U1 944 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 DISC1Q9NRI5 854 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 TRPC6Q9Y210 931 aa16.98■□□□□ 0.31
CPSF1-208ENST00000532560 MAFBQ9Y5Q3 323 aaPredicted RBP16.98■□□□□ 0.31
CPSF1-208ENST00000532560 KAT6AQ92794 2004 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 POTEB3A0JP26 581 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 RRN3P2A6NIE6 340 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 CHMP2AO43633 222 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 PARNO95453 639 aaKnown RBP16.97■□□□□ 0.31
CPSF1-208ENST00000532560 PFKMP08237 780 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 INSRRP14616 1297 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 PPP2R5CQ13362 524 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 TMEM240Q5SV17 173 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 SWSAP1Q6NVH7 229 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 TAF2Q6P1X5 1199 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 PDXDC2PQ6P474 469 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 POTEBQ6S5H4 581 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 LRRC8DQ7L1W4 858 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 C16orf59Q7L2K0 433 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 NOSTRINQ8IVI9 506 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 HAS1Q92839 578 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.97■□□□□ 0.312e-9■□□□□ 10.9
CPSF1-208ENST00000532560 TUBE1Q9UJT0 475 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 SMC3Q9UQE7 1217 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 SAMM50Q9Y512 469 aa16.97■□□□□ 0.31
CPSF1-208ENST00000532560 WNT7AO00755 349 aa16.96■□□□□ 0.31
CPSF1-208ENST00000532560 HBP1O60381 514 aa16.96■□□□□ 0.31
CPSF1-208ENST00000532560 ACRP10323 421 aa16.96■□□□□ 0.31
CPSF1-208ENST00000532560 U2AF2P26368 475 aaKnown RBP eCLIP16.96■□□□□ 0.31
CPSF1-208ENST00000532560 FXR1P51114 621 aaKnown RBP eCLIP16.96■□□□□ 0.31
CPSF1-208ENST00000532560 GNL2Q13823 731 aaKnown RBP16.96■□□□□ 0.31
CPSF1-208ENST00000532560 TRAF7Q6Q0C0 670 aa16.96■□□□□ 0.31
CPSF1-208ENST00000532560 MIER3Q7Z3K6 550 aa16.96■□□□□ 0.31
CPSF1-208ENST00000532560 SLFN12Q8IYM2 578 aa16.96■□□□□ 0.31
CPSF1-208ENST00000532560 RPUSD2Q8IZ73 545 aaKnown RBP16.96■□□□□ 0.31
CPSF1-208ENST00000532560 VWCEQ96DN2 955 aa16.96■□□□□ 0.31
CPSF1-208ENST00000532560 RNPC3Q96LT9 517 aaKnown RBP16.96■□□□□ 0.31
CPSF1-208ENST00000532560 VAV3Q9UKW4 847 aa16.96■□□□□ 0.31
CPSF1-208ENST00000532560 COL1A2P08123 1366 aa16.96■□□□□ 0.31
CPSF1-208ENST00000532560 MYH9P35579 1960 aaKnown RBP16.96■□□□□ 0.31
CPSF1-208ENST00000532560 SCN5AQ14524 2016 aa16.96■□□□□ 0.3
CPSF1-208ENST00000532560 WDR81Q562E7 1941 aa16.96■□□□□ 0.3
CPSF1-208ENST00000532560 KIF28PB7ZC32 967 aa16.95■□□□□ 0.3
CPSF1-208ENST00000532560 NEMFO60524 1076 aa16.95■□□□□ 0.3
CPSF1-208ENST00000532560 ATP4AP20648 1035 aa16.95■□□□□ 0.3
CPSF1-208ENST00000532560 THPOP40225 353 aa16.95■□□□□ 0.3
CPSF1-208ENST00000532560 TRAPPC10P48553 1259 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms