RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 FRMD5Q7Z6J6 570 aa16.32■□□□□ 0.2
ECHDC1-220ENST00000528402 NLGN2Q8NFZ4 835 aa16.32■□□□□ 0.2
ECHDC1-220ENST00000528402 RDM1Q8NG50 284 aa16.32■□□□□ 0.2
ECHDC1-220ENST00000528402 UPF1Q92900 1129 aaKnown RBP eCLIP16.32■□□□□ 0.21e-6■□□□□ 8
ECHDC1-220ENST00000528402 TIPINQ9BVW5 301 aa16.32■□□□□ 0.2
ECHDC1-220ENST00000528402 UNC45AQ9H3U1 944 aa16.32■□□□□ 0.2
ECHDC1-220ENST00000528402 ZHX3Q9H4I2 956 aa16.32■□□□□ 0.2
ECHDC1-220ENST00000528402 ZSWIM4Q9H7M6 989 aa16.32■□□□□ 0.2
ECHDC1-220ENST00000528402 METTL14Q9HCE5 456 aaKnown RBP16.32■□□□□ 0.2
ECHDC1-220ENST00000528402 KCNH7Q9NS40 1196 aa16.32■□□□□ 0.2
ECHDC1-220ENST00000528402 TYW1Q9NV66 732 aaKnown RBP16.32■□□□□ 0.2
ECHDC1-220ENST00000528402 RGL1Q9NZL6 768 aa16.32■□□□□ 0.2
ECHDC1-220ENST00000528402 EPN1Q9Y6I3 576 aaPredicted RBP16.32■□□□□ 0.2
ECHDC1-220ENST00000528402 ZHX2Q9Y6X8 837 aa16.32■□□□□ 0.2
ECHDC1-220ENST00000528402 NPHP3-ACAD11A0A0J9YXS1 232 aa16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 STAM2O75886 525 aa16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 GUCY2CP25092 1073 aa16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 SFNP31947 248 aa16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 GNG11P61952 73 aa16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 RPS6P62753 249 aaKnown RBP16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 CTTNQ14247 550 aaKnown RBP16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 CATSPERGQ6ZRH7 1159 aa16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 UIMC1Q96RL1 719 aa16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 AGO4Q9HCK5 861 aaKnown RBP16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 GGA3Q9NZ52 723 aa16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 TCEAL9Q9UHQ7 104 aa16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 DBR1Q9UK59 544 aaKnown RBP16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 SCAF8Q9UPN6 1271 aaKnown RBP16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 SBF1O95248 1867 aa16.31■□□□□ 0.2
ECHDC1-220ENST00000528402 PHIPQ8WWQ0 1821 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 SLC16A3O15427 465 aaKnown RBP16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 IPO7O95373 1038 aaKnown RBP16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 MAPTP10636 758 aaKnown RBP16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 JAK3P52333 1124 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 ZNF131P52739 623 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 ERVK-24P63145 666 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 UBXN2AP68543 259 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 MTMR1Q13613 665 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 ALCAMQ13740 583 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 PGM5Q15124 567 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 ARHGAP29Q52LW3 1261 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 MUM1L1Q5H9M0 696 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 ARHGEF16Q5VV41 709 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 NLRX1Q86UT6 975 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 SFR1Q86XK3 245 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 TXLNBQ8N3L3 684 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 TRPM4Q8TD43 1214 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 ZKSCAN4Q969J2 545 aaPredicted RBP16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 RMDN3Q96TC7 470 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 HAUS4Q9H6D7 363 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 MRPL44Q9H9J2 332 aaKnown RBP16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 PARVGQ9HBI0 331 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 ADARB2Q9NS39 739 aaKnown RBP16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 TBC1D7Q9P0N9 293 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 COL20A1Q9P218 1284 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 PLAGL2Q9UPG8 496 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 SIK3Q9Y2K2 1263 aa16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.3■□□□□ 0.2
ECHDC1-220ENST00000528402 ARHGEF35A5YM69 484 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 RNF225M0QZC1 329 aaPredicted RBP16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 DHX15O43143 795 aaKnown RBP16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 CHMP2AO43633 222 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 DKC1O60832 514 aaKnown RBP eCLIP16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 NDUFA10O95299 355 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 CCND2P30279 289 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 TUBB4BP68371 445 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 MAP3K9P80192 1104 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 KRT76Q01546 638 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 MTF1Q14872 753 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 TRIM59Q8IWR1 403 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 NELFCDQ8IXH7 590 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 SLC17A8Q8NDX2 589 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 REPS2Q8NFH8 660 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 NEK11Q8NG66 645 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 GOLGA5Q8TBA6 731 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 SYN2Q92777 582 aaPredicted RBP16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 GPRASP2Q96D09 838 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 ATG4CQ96DT6 458 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 CDHR1Q96JP9 859 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 TAAR1Q96RJ0 339 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 PDCD2LQ9BRP1 358 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 RUSC1Q9BVN2 902 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 PXMP2Q9NR77 195 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 RNF146Q9NTX7 359 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 AFG3L2Q9Y4W6 797 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 PCDHB13Q9Y5F0 798 aa16.29■□□□□ 0.2
ECHDC1-220ENST00000528402 RASSF10A6NK89 507 aa16.28■□□□□ 0.2
ECHDC1-220ENST00000528402 EIF3CLB5ME19 914 aaKnown RBP16.28■□□□□ 0.2
ECHDC1-220ENST00000528402 EPS15P42566 896 aa16.28■□□□□ 0.2
ECHDC1-220ENST00000528402 QARSP47897 775 aaKnown RBP16.28■□□□□ 0.2
ECHDC1-220ENST00000528402 CACNB1Q02641 598 aaPredicted RBP16.28■□□□□ 0.2
ECHDC1-220ENST00000528402 MYBPC2Q14324 1141 aa16.28■□□□□ 0.2
ECHDC1-220ENST00000528402 MYCT1Q8N699 235 aa16.28■□□□□ 0.2
ECHDC1-220ENST00000528402 GLIS3Q8NEA6 775 aa16.28■□□□□ 0.2
ECHDC1-220ENST00000528402 NSUN6Q8TEA1 469 aaKnown RBP16.28■□□□□ 0.2
ECHDC1-220ENST00000528402 DCPSQ96C86 337 aaKnown RBP16.28■□□□□ 0.2
ECHDC1-220ENST00000528402 EIF3CQ99613 913 aaKnown RBP16.28■□□□□ 0.2
ECHDC1-220ENST00000528402 SENP7Q9BQF6 1050 aa16.28■□□□□ 0.2
ECHDC1-220ENST00000528402 LXNQ9BS40 222 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms