RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 CCZ1BP86790 482 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 CCZ1P86791 482 aaPredicted RBP21.04■□□□□ 0.96
VPS28-207ENST00000526977 POLR3CQ9BUI4 534 aaPredicted RBP21.04■□□□□ 0.96
VPS28-207ENST00000526977 BLOC1S4Q9NUP1 217 aa21.04■□□□□ 0.96
VPS28-207ENST00000526977 ATP9AO75110 1047 aa21.03■□□□□ 0.96
VPS28-207ENST00000526977 COBLO75128 1261 aa21.03■□□□□ 0.96
VPS28-207ENST00000526977 MAP2K2P36507 400 aa21.03■□□□□ 0.96
VPS28-207ENST00000526977 SENP7Q9BQF6 1050 aa21.03■□□□□ 0.96
VPS28-207ENST00000526977 UNC45AQ9H3U1 944 aa21.03■□□□□ 0.96
VPS28-207ENST00000526977 PKD2L1Q9P0L9 805 aa21.03■□□□□ 0.96
VPS28-207ENST00000526977 TCEAL9Q9UHQ7 104 aa21.03■□□□□ 0.96
VPS28-207ENST00000526977 MAPK8IP1Q9UQF2 711 aa21.03■□□□□ 0.96
VPS28-207ENST00000526977 NFASCO94856 1347 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 EML1O00423 815 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 AMPD3Q01432 767 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 KRT76Q01546 638 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 NR1I3Q14994 352 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 EPHA7Q15375 998 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 TMEM119Q4V9L6 283 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 KCNV1Q6PIU1 500 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 APTXQ7Z2E3 356 aaKnown RBP21.02■□□□□ 0.96
VPS28-207ENST00000526977 CATSPER3Q86XQ3 398 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 ADSSL1Q8N142 457 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 NELFBQ8WX92 580 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 HSD17B14Q9BPX1 270 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 EIF2AK1Q9BQI3 630 aaKnown RBP21.02■□□□□ 0.96
VPS28-207ENST00000526977 KCNA2P16389 499 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 MUTP22033 750 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 PAK1Q13153 545 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 PTPN21Q16825 1174 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 SV2BQ7L1I2 683 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 GIMAP8Q8ND71 665 aaPredicted RBP21.02■□□□□ 0.96
VPS28-207ENST00000526977 TUFT1Q9NNX1 390 aa21.02■□□□□ 0.96
VPS28-207ENST00000526977 ZNFX1Q9P2E3 1918 aaKnown RBP21.01■□□□□ 0.95
VPS28-207ENST00000526977 CHMP2AO43633 222 aa21.01■□□□□ 0.95
VPS28-207ENST00000526977 DHX8Q14562 1220 aaKnown RBP21.01■□□□□ 0.95
VPS28-207ENST00000526977 SEPT14Q6ZU15 432 aa21.01■□□□□ 0.95
VPS28-207ENST00000526977 CCDC150Q8NCX0 1101 aa21.01■□□□□ 0.95
VPS28-207ENST00000526977 NEK9Q8TD19 979 aa21.01■□□□□ 0.95
VPS28-207ENST00000526977 DDX39AO00148 427 aaKnown RBP21■□□□□ 0.95
VPS28-207ENST00000526977 MED24O75448 989 aa21■□□□□ 0.95
VPS28-207ENST00000526977 SPATA31C1P0DKV0 1188 aa21■□□□□ 0.95
VPS28-207ENST00000526977 SFNP31947 248 aa21■□□□□ 0.95
VPS28-207ENST00000526977 MCM6Q14566 821 aa21■□□□□ 0.95
VPS28-207ENST00000526977 ECM1Q16610 540 aa21■□□□□ 0.95
VPS28-207ENST00000526977 MORN1Q5T089 497 aa21■□□□□ 0.95
VPS28-207ENST00000526977 MAMDC4Q6UXC1 1216 aa21■□□□□ 0.95
VPS28-207ENST00000526977 MIER3Q7Z3K6 550 aa21■□□□□ 0.95
VPS28-207ENST00000526977 KIAA1024Q9UPX6 916 aa21■□□□□ 0.95
VPS28-207ENST00000526977 A0A1B0GTH6 734 aa21■□□□□ 0.95
VPS28-207ENST00000526977 JAK3P52333 1124 aa21■□□□□ 0.95
VPS28-207ENST00000526977 ZNF746Q6NUN9 644 aaPredicted RBP21■□□□□ 0.95
VPS28-207ENST00000526977 MSL3Q8N5Y2 521 aaKnown RBP21■□□□□ 0.95
VPS28-207ENST00000526977 RDM1Q8NG50 284 aa21■□□□□ 0.95
VPS28-207ENST00000526977 LARP4BQ92615 738 aaKnown RBP21■□□□□ 0.95
VPS28-207ENST00000526977 LRRC27Q9C0I9 530 aa21■□□□□ 0.95
VPS28-207ENST00000526977 PLXNB2O15031 1838 aa21■□□□□ 0.95
VPS28-207ENST00000526977 SLITRK3O94933 977 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 SFPQP23246 707 aaKnown RBP eCLIP20.99■□□□□ 0.95
VPS28-207ENST00000526977 ASIC1P78348 528 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 MAP2K5Q13163 448 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 TPD52L1Q16890 204 aaPredicted RBP20.99■□□□□ 0.95
VPS28-207ENST00000526977 ARMCX2Q7L311 632 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 KCNK18Q7Z418 384 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 RAD54LQ92698 747 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 POTEB3A0JP26 581 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 MYMKA6NI61 221 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 WDR64B1ANS9 1081 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 TBX2Q13207 712 aaPredicted RBP20.99■□□□□ 0.95
VPS28-207ENST00000526977 NEDD9Q14511 834 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 DNTTIP2Q5QJE6 756 aaKnown RBP20.99■□□□□ 0.95
VPS28-207ENST00000526977 POTEBQ6S5H4 581 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 SMAP1Q8IYB5 467 aaPredicted RBP20.99■□□□□ 0.95
VPS28-207ENST00000526977 MAML3Q96JK9 1138 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 CFHR5Q9BXR6 569 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 JPH1Q9HDC5 661 aaPredicted RBP20.99■□□□□ 0.95
VPS28-207ENST00000526977 DNM3Q9UQ16 869 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 R3HCC1Q9Y3T6 440 aaKnown RBP20.99■□□□□ 0.95
VPS28-207ENST00000526977 SAMM50Q9Y512 469 aa20.99■□□□□ 0.95
VPS28-207ENST00000526977 P4HBP07237 508 aaKnown RBP20.98■□□□□ 0.95
VPS28-207ENST00000526977 HOXC6P09630 235 aa20.98■□□□□ 0.95
VPS28-207ENST00000526977 VEGFBP49765 207 aa20.98■□□□□ 0.95
VPS28-207ENST00000526977 EEPD1Q7L9B9 569 aa20.98■□□□□ 0.95
VPS28-207ENST00000526977 CCDC47Q96A33 483 aaKnown RBP20.98■□□□□ 0.95
VPS28-207ENST00000526977 RGL1Q9NZL6 768 aa20.98■□□□□ 0.95
VPS28-207ENST00000526977 SLC9A2Q9UBY0 812 aa20.98■□□□□ 0.95
VPS28-207ENST00000526977 LRRC10BA6NIK2 292 aa20.97■□□□□ 0.95
VPS28-207ENST00000526977 TNPO2O14787 897 aaKnown RBP20.97■□□□□ 0.95
VPS28-207ENST00000526977 SP2Q02086 613 aa20.97■□□□□ 0.95
VPS28-207ENST00000526977 CYP4A11Q02928 519 aa20.97■□□□□ 0.95
VPS28-207ENST00000526977 SOCS4Q8WXH5 440 aa20.97■□□□□ 0.95
VPS28-207ENST00000526977 DYDC2Q96IM9 177 aa20.97■□□□□ 0.95
VPS28-207ENST00000526977 EXOC1Q9NV70 894 aa20.97■□□□□ 0.95
VPS28-207ENST00000526977 TEX33O43247 280 aa20.97■□□□□ 0.95
VPS28-207ENST00000526977 STK4Q13043 487 aa20.97■□□□□ 0.95
VPS28-207ENST00000526977 SPECC1LQ69YQ0 1117 aa20.97■□□□□ 0.95
VPS28-207ENST00000526977 TPH2Q8IWU9 490 aa20.97■□□□□ 0.95
VPS28-207ENST00000526977 CTAGE1Q96RT6 745 aa20.97■□□□□ 0.95
VPS28-207ENST00000526977 VTA1Q9NP79 307 aa20.97■□□□□ 0.95
VPS28-207ENST00000526977 LIMA1Q9UHB6 759 aaKnown RBP20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms