RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 COG5Q9UP83 839 aa11.56□□□□□ -0.56
VPS28-204ENST00000526054 BRWD1Q9NSI6 2320 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 H3BRB1 525 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 FIBPO43427 364 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 LPXNO60711 386 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 STAM2O75886 525 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 FOSP01100 380 aaPredicted RBP11.55□□□□□ -0.56
VPS28-204ENST00000526054 SMIM10L2AP0DMW4 78 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 SMIM10L2BP0DMW5 78 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 BMP1P13497 986 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 NLRP5P59047 1200 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 HMGN5P82970 282 aaKnown RBP11.55□□□□□ -0.56
VPS28-204ENST00000526054 ST3GAL1Q11201 340 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 AP3B2Q13367 1082 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 MCTP2Q6DN12 878 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 FAM117BQ6P1L5 589 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 REXO1Q8N1G1 1221 aaKnown RBP11.55□□□□□ -0.56
VPS28-204ENST00000526054 ATP6V0A1Q93050 837 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 INPP4AQ96PE3 977 aaPredicted RBP11.55□□□□□ -0.56
VPS28-204ENST00000526054 TGS1Q96RS0 853 aaKnown RBP11.55□□□□□ -0.56
VPS28-204ENST00000526054 RAD9AQ99638 391 aa11.55□□□□□ -0.56
VPS28-204ENST00000526054 TUT1Q9H6E5 874 aaKnown RBP11.55□□□□□ -0.56
VPS28-204ENST00000526054 LINC01553A4QN01 128 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 RSPH10B2B2RC85 870 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 AMHP03971 560 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 CTSHP09668 335 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 RSPH10BP0C881 870 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 COL9A1P20849 921 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 HOXC8P31273 242 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 ICAM3P32942 547 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 MRPS9P82933 396 aaKnown RBP11.54□□□□□ -0.56
VPS28-204ENST00000526054 NEDD9Q14511 834 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 GALNT17Q6IS24 598 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 XRRA1Q6P2D8 792 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 METTL7BQ6UX53 244 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 TRIM50Q86XT4 487 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 MYOCDQ8IZQ8 938 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 HLA-CQ95604 372 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 TMX3Q96JJ7 454 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 ZNF215Q9UL58 517 aaPredicted RBP11.54□□□□□ -0.56
VPS28-204ENST00000526054 PCDHA6Q9UN73 950 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 PCDHA8Q9Y5H6 950 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 NLRC5Q86WI3 1866 aa11.54□□□□□ -0.56
VPS28-204ENST00000526054 COL4A6Q14031 1691 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 SPATA31C2B4DYI2 1134 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 TREHO43280 583 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 JAK2O60674 1132 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 CAND2O75155 1236 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 CD2BP2O95400 341 aaKnown RBP11.53□□□□□ -0.56
VPS28-204ENST00000526054 CLK2P49760 499 aaKnown RBP11.53□□□□□ -0.56
VPS28-204ENST00000526054 ERVK-21P61565 698 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 SP4Q02446 784 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 SEMA3FQ13275 785 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 TRIM29Q14134 588 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 PCNX4Q63HM2 1172 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.53□□□□□ -0.56
VPS28-204ENST00000526054 CYFIP1Q7L576 1253 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 FAM184AQ8NB25 1140 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 DBF4BQ8NFT6 615 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 AIFM3Q96NN9 605 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 GPR20Q99678 358 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 ANO3Q9BYT9 981 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 BCAS3Q9H6U6 928 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 SUGCTQ9HAC7 445 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 RTEL1Q9NZ71 1219 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 LMCD1Q9NZU5 365 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 PCDHA4Q9UN74 947 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 KIF3AQ9Y496 699 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 INSL6Q9Y581 213 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 BDP1A6H8Y1 2624 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 RALGAPA2Q2PPJ7 1873 aa11.53□□□□□ -0.56
VPS28-204ENST00000526054 KAT6AQ92794 2004 aa11.52□□□□□ -0.56
VPS28-204ENST00000526054 GNAT1P11488 350 aa11.52□□□□□ -0.57
VPS28-204ENST00000526054 FDPSP14324 419 aaKnown RBP11.52□□□□□ -0.57
VPS28-204ENST00000526054 MKRN4PQ13434 485 aaPredicted RBP11.52□□□□□ -0.57
VPS28-204ENST00000526054 PLEKHG4Q58EX7 1191 aa11.52□□□□□ -0.57
VPS28-204ENST00000526054 UTP14CQ5TAP6 766 aaKnown RBP11.52□□□□□ -0.57
VPS28-204ENST00000526054 JAKMIP3Q5VZ66 844 aa11.52□□□□□ -0.57
VPS28-204ENST00000526054 NLRX1Q86UT6 975 aa11.52□□□□□ -0.57
VPS28-204ENST00000526054 BLIDQ8IZY5 108 aa11.52□□□□□ -0.57
VPS28-204ENST00000526054 DAGLBQ8NCG7 672 aa11.52□□□□□ -0.57
VPS28-204ENST00000526054 FBXO22Q8NEZ5 403 aa11.52□□□□□ -0.57
VPS28-204ENST00000526054 SEPT8Q92599 483 aa11.52□□□□□ -0.57
VPS28-204ENST00000526054 RNPEPQ9H4A4 650 aa11.52□□□□□ -0.57
VPS28-204ENST00000526054 BRMS1Q9HCU9 246 aa11.52□□□□□ -0.57
VPS28-204ENST00000526054 SETD4Q9NVD3 440 aa11.52□□□□□ -0.57
VPS28-204ENST00000526054 TMEM260Q9NX78 707 aa11.52□□□□□ -0.57
VPS28-204ENST00000526054 DTNBO60941 627 aa11.51□□□□□ -0.57
VPS28-204ENST00000526054 SREBF1P36956 1147 aa11.51□□□□□ -0.57
VPS28-204ENST00000526054 HTRA4P83105 476 aaPredicted RBP11.51□□□□□ -0.57
VPS28-204ENST00000526054 ARHGAP4P98171 946 aa11.51□□□□□ -0.57
VPS28-204ENST00000526054 HSCBQ8IWL3 235 aa11.51□□□□□ -0.57
VPS28-204ENST00000526054 GIMAP8Q8ND71 665 aaPredicted RBP11.51□□□□□ -0.57
VPS28-204ENST00000526054 LMBR1Q8WVP7 490 aa11.51□□□□□ -0.57
VPS28-204ENST00000526054 PGBD1Q96JS3 809 aa11.51□□□□□ -0.57
VPS28-204ENST00000526054 YME1L1Q96TA2 773 aa11.51□□□□□ -0.57
VPS28-204ENST00000526054 SENP7Q9BQF6 1050 aa11.51□□□□□ -0.57
VPS28-204ENST00000526054 C17orf80Q9BSJ5 609 aa11.51□□□□□ -0.57
VPS28-204ENST00000526054 PHF20Q9BVI0 1012 aa11.51□□□□□ -0.57
VPS28-204ENST00000526054 TSHZ2Q9NRE2 1034 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms