RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TDRKHQ9Y2W6 561 aaKnown RBP13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 XRN1Q8IZH2 1706 aaKnown RBP13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 A0A0J9YVX5 310 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 SLC1A4P43007 532 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 MTIF2P46199 727 aaKnown RBP13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 GALK1P51570 392 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 RTP1P59025 263 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 TNNI3KQ59H18 835 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 OTUD6AQ7L8S5 288 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 ZNF554Q86TJ5 538 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 KSR1Q8IVT5 923 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 NCOA7Q8NI08 942 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 DHRS1Q96LJ7 313 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 FPGT-TNNI3KV9GXZ4 949 aa13.07□□□□□ -0.32
LIMCH1-213ENST00000511496 NCAPD2Q15021 1401 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 TMEM110-MUSTN1A8MSY1 372 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 BOLA2-SMG1P6H3BVE0 249 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 AFPP02771 609 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 PYGMP11217 842 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 SLC4A8Q2Y0W8 1093 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 CERKLQ49MI3 558 aaPredicted RBP13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 RILPL1Q5EBL4 403 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 INTS8Q75QN2 995 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 RIBC1Q8N443 379 aaPredicted RBP13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 IQCDQ96DY2 449 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 CELF4Q9BZC1 486 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 DENND2DQ9H6A0 471 aaPredicted RBP13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 PFDN4Q9NQP4 134 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 STRN4Q9NRL3 753 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 HSFX1Q9UBD0 423 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 DBR1Q9UK59 544 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 ADGRB3O60242 1522 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 GNAT3A8MTJ3 354 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 ASLP04424 464 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 GUCY1A2P33402 732 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 HOXD12P35452 270 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 OXCT1P55809 520 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 SPATA24Q86W54 205 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 CMTR1Q8N1G2 835 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 ATP8B4Q8TF62 1192 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 KAZALD1Q96I82 304 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 GOLPH3Q9H4A6 298 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 MMRN2Q9H8L6 949 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 R3HDM2Q9Y2K5 976 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 USP20Q9Y2K6 914 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 COMMD3-BMI1R4GMX3 469 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 NDUFB5O43674 189 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 ADARP55265 1226 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 LIN52Q52LA3 116 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 RRAGAQ7L523 313 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 SLC15A3Q8IY34 581 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 IL17REQ8NFR9 667 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 ARHGEF2Q92974 986 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 AZIN2Q96A70 460 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 CENPKQ9BS16 269 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 KCNK9Q9NPC2 374 aa13.06□□□□□ -0.32
LIMCH1-213ENST00000511496 MAST3O60307 1309 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 MST1RQ04912 1400 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 GRM8O00222 908 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 SRGNP10124 158 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 ITGA6P23229 1130 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 ERFP50548 548 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 RCN1Q15293 331 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 KHDC1Q4VXA5 237 aaKnown RBP13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 STAG2Q8N3U4 1231 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 PPFIBP2Q8ND30 876 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 ABHD8Q96I13 439 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 HAUS7Q99871 368 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 NLRC4Q9NPP4 1024 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 UBAP1Q9NZ09 502 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 CLIC5Q9NZA1 410 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 ABCC12Q96J65 1359 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 GOLGA8AA7E2F4 631 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 TTI1O43156 1089 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 RANBP6O60518 1105 aaKnown RBP13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 SSRP1Q08945 709 aaKnown RBP13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 CMPK2Q5EBM0 449 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 HS2ST1Q7LGA3 356 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 ZNF579Q8NAF0 562 aaKnown RBP13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 OXER1Q8TDS5 423 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 TBC1D10AQ9BXI6 508 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 FAM114A2Q9NRY5 505 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 TXLNGQ9NUQ3 528 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 SLC4A7Q9Y6M7 1214 aa13.05□□□□□ -0.32
LIMCH1-213ENST00000511496 FAM205CA6NFA0 338 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 FGAP02671 866 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 LYNP07948 512 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 VCAM1P19320 739 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 EPHA10Q5JZY3 1008 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 GRAMD4Q6IC98 578 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 C3orf67Q6ZVT6 689 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 SH3RF1Q7Z6J0 888 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 PDCD7Q8N8D1 485 aaKnown RBP13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 LZICQ8WZA0 190 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 GATA6Q92908 595 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 ERP27Q96DN0 273 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 INPP4AQ96PE3 977 aaPredicted RBP13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 DCLRE1BQ9H816 532 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 INIPQ9NRY2 104 aa13.04□□□□□ -0.32
LIMCH1-213ENST00000511496 PAG1Q9NWQ8 432 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms