RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 IGBP1P78318 339 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 PTPN11Q06124 597 aaPredicted RBP12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 PPFIA1Q13136 1202 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 RILPL1Q5EBL4 403 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 GDF6Q6KF10 455 aaPredicted RBP12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 BRAPQ7Z569 592 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 SH3RF1Q7Z6J0 888 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 CCDC60Q8IWA6 550 aaPredicted RBP12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 FAM126BQ8IXS8 530 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 SLC43A3Q8NBI5 491 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 HAS1Q92839 578 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 TOX2Q96NM4 488 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 PCYT2Q99447 389 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 LBHD1Q9BQE6 289 aaPredicted RBP12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 PDLIM7Q9NR12 457 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 PCDH10Q9P2E7 1040 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 DAXXQ9UER7 740 aaPredicted RBP12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 PCDHB6Q9Y5E3 794 aa12.87□□□□□ -0.35
LIMCH1-210ENST00000509454 HAS3O00219 553 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 ATG7O95352 703 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 OR52Z1P0C646 297 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 GNAT1P11488 350 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 CYP2C9P11712 490 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 RAG1P15918 1043 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 TOB1P50616 345 aaPredicted RBP12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 FAAP100Q0VG06 881 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 TMEM266Q2M3C6 531 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 TNPO1Q92973 898 aaKnown RBP12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 PPP1R12CQ9BZL4 782 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 TMEM60Q9H2L4 133 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 RNPEPQ9H4A4 650 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 TTC12Q9H892 705 aaPredicted RBP12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 SETD4Q9NVD3 440 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 GTF2IRD1Q9UHL9 959 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 PCDHA12Q9UN75 941 aa12.86□□□□□ -0.35
LIMCH1-210ENST00000509454 POTEB3A0JP26 581 aa12.85□□□□□ -0.35
LIMCH1-210ENST00000509454 ZNF200P98182 395 aaPredicted RBP12.85□□□□□ -0.35
LIMCH1-210ENST00000509454 ORC2Q13416 577 aaPredicted RBP12.85□□□□□ -0.35
LIMCH1-210ENST00000509454 PLCB4Q15147 1175 aa12.85□□□□□ -0.35
LIMCH1-210ENST00000509454 POTEBQ6S5H4 581 aa12.85□□□□□ -0.35
LIMCH1-210ENST00000509454 PLPPR4Q7Z2D5 763 aa12.85□□□□□ -0.35
LIMCH1-210ENST00000509454 BANK1Q8NDB2 785 aa12.85□□□□□ -0.35
LIMCH1-210ENST00000509454 RDM1Q8NG50 284 aa12.85□□□□□ -0.35
LIMCH1-210ENST00000509454 ATP6V0A1Q93050 837 aa12.85□□□□□ -0.35
LIMCH1-210ENST00000509454 VAV3Q9UKW4 847 aa12.85□□□□□ -0.35
LIMCH1-210ENST00000509454 MTMR6Q9Y217 621 aa12.85□□□□□ -0.35
LIMCH1-210ENST00000509454 KAT6AQ92794 2004 aa12.85□□□□□ -0.35
LIMCH1-210ENST00000509454 TRIM43BA6NCK2 446 aa12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 EML1O00423 815 aa12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 CD4P01730 458 aa12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 ANP32AP39687 249 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 TECP42680 631 aa12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 SLC26A2P50443 739 aa12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 MDM2Q00987 491 aaPredicted RBP12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 PTGDRQ13258 359 aa12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 PPP2R5CQ13362 524 aa12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 GRIK4Q16099 956 aa12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 SESTD1Q86VW0 696 aa12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 RETREG2Q8NC44 543 aa12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 AFAP1L1Q8TED9 768 aa12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 TRIM43Q96BQ3 446 aaPredicted RBP12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 MTMR9Q96QG7 549 aa12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 HIPK3Q9H422 1215 aa12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 MYH9P35579 1960 aaKnown RBP12.84□□□□□ -0.35
LIMCH1-210ENST00000509454 IGKV6D-21A0A0A0MT36 114 aa12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 INSRRP14616 1297 aa12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 PRKCEQ02156 737 aa12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 CYP4A11Q02928 519 aa12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 RESTQ13127 1097 aa12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 BFSP2Q13515 415 aa12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 UGCGQ16739 394 aa12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 CCDC155Q8N6L0 562 aa12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 ATP8B4Q8TF62 1192 aa12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 LMBR1Q8WVP7 490 aa12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 FAM167AQ96KS9 214 aa12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 NRBP2Q9NSY0 501 aa12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 SEPT9Q9UHD8 586 aaPredicted RBP12.83□□□□□ -0.35
LIMCH1-210ENST00000509454 NRCAMQ92823 1304 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 POTEMA6NI47 508 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 DDX11L8A8MPP1 907 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 KIAA0355O15063 1070 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 TREHO43280 583 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 HBP1O60381 514 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 OATP04181 439 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 CYP2C18P33260 490 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 CCL23P55773 120 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 PSMC5P62195 406 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 CEBPZQ03701 1054 aaKnown RBP12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 CTTNQ14247 550 aaKnown RBP12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 EPHA7Q15375 998 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 FOXD4L6Q3SYB3 417 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 FAM173BQ6P4H8 233 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 FOXD4L3Q6VB84 417 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 TPH2Q8IWU9 490 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 ERMNQ8TAM6 284 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 TRAPPC12Q8WVT3 735 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 BBXQ8WY36 941 aaPredicted RBP12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 BADQ92934 168 aa12.83□□□□□ -0.36
LIMCH1-210ENST00000509454 DYDC2Q96IM9 177 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms