RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 RAG1P15918 1043 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 PTGS1P23219 599 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 NUCB2P80303 420 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 ARHGAP1Q07960 439 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 ORC2Q13416 577 aaPredicted RBP11.33□□□□□ -0.6
NUP54-203ENST00000504173 LAMC2Q13753 1193 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 CALCRLQ16602 461 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 CELF3Q5SZQ8 465 aaKnown RBP11.33□□□□□ -0.6
NUP54-203ENST00000504173 METTL7BQ6UX53 244 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 CYFIP1Q7L576 1253 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 SPATA33Q96N06 139 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.33□□□□□ -0.6
NUP54-203ENST00000504173 TCEAL9Q9UHQ7 104 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 MSRAQ9UJ68 235 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 Q9Y3F1 56 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 PCDHB6Q9Y5E3 794 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 C5orf42Q9H799 3197 aa11.33□□□□□ -0.6
NUP54-203ENST00000504173 GRXCR1A8MXD5 290 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 DDX39AO00148 427 aaKnown RBP11.32□□□□□ -0.6
NUP54-203ENST00000504173 NOP56O00567 594 aaKnown RBP11.32□□□□□ -0.6
NUP54-203ENST00000504173 GAS7O60861 476 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 DDIT3P35638 169 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 GJA9P57773 515 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 SP4Q02446 784 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 ITGB3BPQ13352 177 aaPredicted RBP11.32□□□□□ -0.6
NUP54-203ENST00000504173 BRDTQ58F21 947 aaPredicted RBP11.32□□□□□ -0.6
NUP54-203ENST00000504173 LRCH2Q5VUJ6 765 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 FAM173BQ6P4H8 233 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 RNF180Q86T96 592 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 ETNPPLQ8TBG4 499 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 SLC5A5Q92911 643 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 EMID1Q96A84 441 aaPredicted RBP11.32□□□□□ -0.6
NUP54-203ENST00000504173 FAM20AQ96MK3 541 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 TEKT3Q9BXF9 490 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 UPF3AQ9H1J1 476 aaKnown RBP11.32□□□□□ -0.6
NUP54-203ENST00000504173 JPH1Q9HDC5 661 aaPredicted RBP11.32□□□□□ -0.6
NUP54-203ENST00000504173 KCNMB3Q9NPA1 279 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 TBC1D22BQ9NU19 505 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 CIZ1Q9ULV3 898 aaPredicted RBP11.32□□□□□ -0.6
NUP54-203ENST00000504173 EPG5Q9HCE0 2579 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 NFASCO94856 1347 aa11.32□□□□□ -0.6
NUP54-203ENST00000504173 MYADML2A6NDP7 307 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 TBX3O15119 743 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 ZEB2O60315 1214 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 ADAMTS4O75173 837 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 OR52Z1P0C646 297 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 ALADP13716 330 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 CPT1AP50416 773 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 BEX3Q00994 111 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 SKIV2LQ15477 1246 aaKnown RBP11.31□□□□□ -0.6
NUP54-203ENST00000504173 FSCN1Q16658 493 aaKnown RBP11.31□□□□□ -0.6
NUP54-203ENST00000504173 FOXD4L6Q3SYB3 417 aaPredicted RBP11.31□□□□□ -0.6
NUP54-203ENST00000504173 GNASQ5JWF2 1037 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 TMEM240Q5SV17 173 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 FOXD4L3Q6VB84 417 aaPredicted RBP11.31□□□□□ -0.6
NUP54-203ENST00000504173 SLFN12Q8IYM2 578 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 AFG1LQ8WV93 481 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 GJA10Q969M2 543 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 ZNF396Q96N95 335 aaPredicted RBP11.31□□□□□ -0.6
NUP54-203ENST00000504173 RIT2Q99578 217 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 TMEM60Q9H2L4 133 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 BCAS3Q9H6U6 928 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 SLC28A3Q9HAS3 691 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.31□□□□□ -0.6
NUP54-203ENST00000504173 SLC9A2Q9UBY0 812 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 CEP131Q9UPN4 1083 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 ZDHHC9Q9Y397 364 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 DOCK5Q9H7D0 1870 aa11.31□□□□□ -0.6
NUP54-203ENST00000504173 CACNA1GO43497 2377 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 DHX15O43143 795 aaKnown RBP11.3□□□□□ -0.6
NUP54-203ENST00000504173 CHMP2AO43633 222 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 PSMD10O75832 226 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 BMP15O95972 392 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 MMP3P08254 477 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 CST5P28325 142 aaPredicted RBP11.3□□□□□ -0.6
NUP54-203ENST00000504173 NKX3-2P78367 333 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 IRX5P78411 483 aaPredicted RBP11.3□□□□□ -0.6
NUP54-203ENST00000504173 KRT76Q01546 638 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 CEBPZQ03701 1054 aaKnown RBP11.3□□□□□ -0.6
NUP54-203ENST00000504173 C1QBPQ07021 282 aaKnown RBP11.3□□□□□ -0.6
NUP54-203ENST00000504173 PTGDRQ13258 359 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 LRRC41Q15345 812 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 SF3A1Q15459 793 aaKnown RBP11.3□□□□□ -0.6
NUP54-203ENST00000504173 CSPP1Q1MSJ5 1256 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 HSDL1Q3SXM5 330 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 C16orf59Q7L2K0 433 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 ERMP1Q7Z2K6 904 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 MICALL1Q8N3F8 863 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 PCSK9Q8NBP7 692 aaKnown RBP11.3□□□□□ -0.6
NUP54-203ENST00000504173 KLHDC9Q8NEP7 349 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 PPTC7Q8NI37 304 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 HAS1Q92839 578 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 MTMR9Q96QG7 549 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 PHOX2BQ99453 314 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 FTOQ9C0B1 505 aaKnown RBP eCLIP11.3□□□□□ -0.6
NUP54-203ENST00000504173 ATP6V1DQ9Y5K8 247 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 CLIC4Q9Y696 253 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 ZFHX2Q9C0A1 2572 aaPredicted RBP11.3□□□□□ -0.6
NUP54-203ENST00000504173 ELP1O95163 1332 aa11.3□□□□□ -0.6
NUP54-203ENST00000504173 PRRC2BQ5JSZ5 2229 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms