RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 RBBP6Q7Z6E9 1792 aaKnown RBP13.21□□□□□ -0.3
NUP54-202ENST00000502850 AGBL3Q8NEM8 1001 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 BAP1Q92560 729 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 RUBCNQ92622 972 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 WDR11Q9BZH6 1224 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 ACBD3Q9H3P7 528 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 VCPKMTQ9H867 229 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 KCND2Q9NZV8 630 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 FEM1BQ9UK73 627 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 PCDHA13Q9Y5I0 950 aa13.21□□□□□ -0.3
NUP54-202ENST00000502850 A0A1W2PRG0 241 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 TARSL2A2RTX5 802 aaKnown RBP13.2□□□□□ -0.3
NUP54-202ENST00000502850 EIF3DO15371 548 aaKnown RBP eCLIP13.2□□□□□ -0.3
NUP54-202ENST00000502850 SPATA31C1P0DKV0 1188 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 SLURP2P0DP57 97 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 PRLRP16471 622 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 ANXA13P27216 316 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 EIF4A3P38919 411 aaKnown RBP13.2□□□□□ -0.3
NUP54-202ENST00000502850 APLP1P51693 650 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 PPP2R5CQ13362 524 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 ADAM9Q13443 819 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 KNOP1Q1ED39 458 aaKnown RBP13.2□□□□□ -0.3
NUP54-202ENST00000502850 WDR93Q6P2C0 686 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 HDXQ7Z353 690 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 LARGE2Q8N3Y3 721 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 RNF10Q8N5U6 811 aaKnown RBP13.2□□□□□ -0.3
NUP54-202ENST00000502850 NEK9Q8TD19 979 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 GJA10Q969M2 543 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 ZHX3Q9H4I2 956 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 ZSWIM4Q9H7M6 989 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 ANKZF1Q9H8Y5 726 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 OLFML3Q9NRN5 406 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 TYW1Q9NV66 732 aaKnown RBP13.2□□□□□ -0.3
NUP54-202ENST00000502850 ARHGAP20Q9P2F6 1191 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 SEL1LQ9UBV2 794 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 PNMA2Q9UL42 364 aa13.2□□□□□ -0.3
NUP54-202ENST00000502850 TCP10L2B9ZVM9 353 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 RBAK-RBAKDNI3L0D1 243 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 PPP1R12BO60237 982 aaPredicted RBP13.19□□□□□ -0.3
NUP54-202ENST00000502850 TBC1D8O95759 1140 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 NR2F2P24468 414 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 ITIH3Q06033 890 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 FSTL1Q12841 308 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 PABPC4Q13310 644 aaKnown RBP eCLIP13.19□□□□□ -0.3
NUP54-202ENST00000502850 LONRF2Q1L5Z9 754 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 ARSHQ5FYA8 562 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 EPM2AIP1Q7L775 607 aaPredicted RBP13.19□□□□□ -0.3
NUP54-202ENST00000502850 NELFCDQ8IXH7 590 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 GLIS3Q8NEA6 775 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 CAGE1Q8TC20 777 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 GMLQ99445 158 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 EIF2AK1Q9BQI3 630 aaKnown RBP13.19□□□□□ -0.3
NUP54-202ENST00000502850 REEP2Q9BRK0 252 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 LSM14BQ9BX40 385 aaKnown RBP13.19□□□□□ -0.3
NUP54-202ENST00000502850 GINM1Q9NU53 330 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 TRIM10Q9UDY6 481 aa13.19□□□□□ -0.3
NUP54-202ENST00000502850 ARMCX3Q9UH62 379 aaPredicted RBP13.19□□□□□ -0.3
NUP54-202ENST00000502850 ATP8B3O60423 1300 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 IGLV3-22A0A075B6J6 115 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 OPLAHO14841 1288 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 ABL1P00519 1130 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 ATP1A1P05023 1023 aaKnown RBP13.18□□□□□ -0.3
NUP54-202ENST00000502850 EPB41P11171 864 aaKnown RBP13.18□□□□□ -0.3
NUP54-202ENST00000502850 TCP1P17987 556 aaKnown RBP13.18□□□□□ -0.3
NUP54-202ENST00000502850 MAGEA1P43355 309 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 NFIL3Q16649 462 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 TDRD12Q587J7 1177 aaKnown RBP13.18□□□□□ -0.3
NUP54-202ENST00000502850 FAM83BQ5T0W9 1011 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 C10orf76Q5T2E6 689 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 LRCH2Q5VUJ6 765 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 FMNL3Q8IVF7 1028 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 NIM1KQ8IY84 436 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 SLC5A5Q92911 643 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 LACRTQ9GZZ8 138 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 DEFB129Q9H1M3 183 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 PLCB1Q9NQ66 1216 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 PRDM10Q9NQV6 1147 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 TBC1D7Q9P0N9 293 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 DAAM1Q9Y4D1 1078 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 BZW2Q9Y6E2 419 aaKnown RBP13.18□□□□□ -0.3
NUP54-202ENST00000502850 CNTNAP1P78357 1384 aa13.18□□□□□ -0.3
NUP54-202ENST00000502850 GAS7O60861 476 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 FAM13AO94988 1023 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 CFBP00751 764 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 AFPP02771 609 aaKnown RBP13.17□□□□□ -0.3
NUP54-202ENST00000502850 ASNSP08243 561 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 XRCC5P13010 732 aaKnown RBP13.17□□□□□ -0.3
NUP54-202ENST00000502850 HOXA13P31271 388 aaPredicted RBP13.17□□□□□ -0.3
NUP54-202ENST00000502850 PLA2G4AP47712 749 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 SNAP25P60880 206 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 KCNMA1Q12791 1236 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 SFR1Q86XK3 245 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 SPICE1Q8N0Z3 855 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 SAMD3Q8N6K7 520 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 NOX5Q96PH1 765 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 P2RX7Q99572 595 aaKnown RBP13.17□□□□□ -0.3
NUP54-202ENST00000502850 BHMT2Q9H2M3 363 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 SNX12Q9UMY4 172 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 WDR90Q96KV7 1748 aa13.17□□□□□ -0.3
NUP54-202ENST00000502850 FRMPD4Q14CM0 1322 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms