RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ASNSP08243 561 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 IGBP1P78318 339 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 LACTBP83111 547 aaPredicted RBP11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 DPYDQ12882 1025 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CRY2Q49AN0 593 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ARL6IP4Q66PJ3 421 aaKnown RBP11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 NAIF1Q69YI7 327 aaPredicted RBP11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SFR1Q86XK3 245 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CACNA2D3Q8IZS8 1091 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 RPGRIP1Q96KN7 1286 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PPP1R12CQ9BZL4 782 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 MRPL11Q9Y3B7 192 aaKnown RBP11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 K7ENM7 598 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TFRCP02786 760 aaKnown RBP11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SETSIPP0DME0 302 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 KRT13P13646 458 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 MAGEA1P43355 309 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 MAP3K9P80192 1104 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 BIRC3Q13489 604 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CCDC6Q16204 474 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 IL17AQ16552 155 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 LDHDQ86WU2 507 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 JAKMIP2Q96AA8 810 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SHISA4Q96DD7 197 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 DYDC2Q96IM9 177 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ZMYND12Q9H0C1 365 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 EMILIN3Q9NT22 766 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SAMD15Q9P1V8 674 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TUBE1Q9UJT0 475 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ASTN2O75129 1339 aaPredicted RBP11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TTC26A0AVF1 554 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SRGAP2O75044 1071 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 HOXA10P31260 410 aaPredicted RBP11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 GGCXP38435 758 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 NCAPHQ15003 741 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 NBPF12Q5TAG4 269 aaPredicted RBP11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 NLRX1Q86UT6 975 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CEP120Q8N960 986 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ZNF579Q8NAF0 562 aaKnown RBP11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TCP11Q8WWU5 503 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ELMO3Q96BJ8 720 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 IL17RAQ96F46 866 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SELENOSQ9BQE4 189 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 NT5C3AQ9H0P0 336 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 DEFB129Q9H1M3 183 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 KLC4Q9NSK0 619 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 AGPAT5Q9NUQ2 364 aa11.73□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 APBA1Q02410 837 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 LMNTD2Q8IXW0 634 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CTNNBL1Q8WYA6 563 aaPredicted RBP11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 GLG1Q92896 1179 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 NUCKS1Q9H1E3 243 aaKnown RBP11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 RNF181Q9P0P0 153 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TLDC2A0PJX2 215 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TMEM150BA6NC51 233 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 FUT2Q10981 343 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 RIN2Q8WYP3 895 aaPredicted RBP11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 OTUD5Q96G74 571 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 RMDN3Q96TC7 470 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 EPN1Q9Y6I3 576 aaPredicted RBP11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 RSPH10B2B2RC85 870 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SMIM24O75264 130 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 RSPH10BP0C881 870 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 KLHL30Q0D2K2 578 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SH3GL3Q99963 347 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 IFIH1Q9BYX4 1025 aaKnown RBP11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 NSRP1Q9H0G5 558 aaKnown RBP11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 GGA3Q9NZ52 723 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ARMCX3Q9UH62 379 aaPredicted RBP11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CSADQ9Y600 493 aa11.72□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 MYO1FO00160 1098 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 EPB41P11171 864 aaKnown RBP11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 NMT1P30419 496 aaKnown RBP11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TRIM68Q6AZZ1 485 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SNRNP48Q6IEG0 339 aaKnown RBP11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 KCNK18Q7Z418 384 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ZDHHC15Q96MV8 337 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 MTA3Q9BTC8 594 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TRIM31Q9BZY9 425 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CD248Q9HCU0 757 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 MYOZ2Q9NPC6 264 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 FRMD4BQ9Y2L6 1034 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 SLIT2O94813 1529 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 ARFGEF2Q9Y6D5 1785 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 A0A0U1RQJ8 604 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 A0A1W2PRG0 241 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 VIMP08670 466 aaKnown RBP11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CCNE1P24864 410 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 KCNJ6P48051 423 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 PSMC6P62333 389 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 HIBCHQ6NVY1 386 aaPredicted RBP11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 TMED8Q6PL24 325 aaPredicted RBP11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 CCDC170Q8IYT3 715 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 FAM133AQ8N9E0 248 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 YIPF3Q9GZM5 350 aa11.71□□□□□ -0.53
MSH5-SAPCD1-207ENST00000493662 YDJCA8MPS7 323 aa11.71□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 EGFRP00533 1210 aa11.71□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 XRCC5P13010 732 aaKnown RBP11.71□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 KRT5P13647 590 aa11.71□□□□□ -0.54
MSH5-SAPCD1-207ENST00000493662 ZC2HC1CQ53FD0 456 aaPredicted RBP11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms