RNA–Protein interactions for RNA: ENST00000489537.5

SF3A3-208, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 4

Gene SF3A3, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-208ENST00000489537 TRIM9Q9C026 710 aa7.09□□□□□ -1.27
SF3A3-208ENST00000489537 XPO4Q9C0E2 1151 aaKnown RBP7.09□□□□□ -1.27
SF3A3-208ENST00000489537 TMEM39BQ9GZU3 492 aa7.09□□□□□ -1.27
SF3A3-208ENST00000489537 TMEM60Q9H2L4 133 aa7.09□□□□□ -1.27
SF3A3-208ENST00000489537 TUFT1Q9NNX1 390 aa7.09□□□□□ -1.27
SF3A3-208ENST00000489537 KCNMB3Q9NPA1 279 aa7.09□□□□□ -1.27
SF3A3-208ENST00000489537 SPTLC3Q9NUV7 552 aa7.09□□□□□ -1.27
SF3A3-208ENST00000489537 HOXC10Q9NYD6 342 aa7.09□□□□□ -1.27
SF3A3-208ENST00000489537 IFNKQ9P0W0 207 aa7.09□□□□□ -1.27
SF3A3-208ENST00000489537 GMPR2Q9P2T1 348 aaKnown RBP7.09□□□□□ -1.27
SF3A3-208ENST00000489537 PCDHGC3Q9UN70 934 aa7.09□□□□□ -1.27
SF3A3-208ENST00000489537 DNM3Q9UQ16 869 aa7.09□□□□□ -1.27
SF3A3-208ENST00000489537 PAXBP1Q9Y5B6 917 aa7.09□□□□□ -1.27
SF3A3-208ENST00000489537 WASF2Q9Y6W5 498 aa7.09□□□□□ -1.27
SF3A3-208ENST00000489537 ITIH6Q6UXX5 1313 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 A0A1B0GTH6 734 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 PHF20L1A8MW92 1017 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 ARHGAP6O43182 974 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 STX10O60499 249 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 PPP1R11O60927 126 aaPredicted RBP7.08□□□□□ -1.28
SF3A3-208ENST00000489537 SKILP12757 684 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 GAP43P17677 238 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 NDUFV2P19404 249 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 CCNE1P24864 410 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 GJA5P36382 358 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 IREB2P48200 963 aaKnown RBP7.08□□□□□ -1.28
SF3A3-208ENST00000489537 BACE1P56817 501 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 HUNKP57058 714 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 SKOR1P84550 965 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 GRIN1Q05586 938 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 PDE4DQ08499 809 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 PABPC4Q13310 644 aaKnown RBP eCLIP7.08□□□□□ -1.28
SF3A3-208ENST00000489537 TMEM119Q4V9L6 283 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 CEP55Q53EZ4 464 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 FAM83BQ5T0W9 1011 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 CDKAL1Q5VV42 579 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 DESI1Q6ICB0 168 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 USP49Q70CQ1 688 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 CCDC84Q86UT8 332 aaPredicted RBP7.08□□□□□ -1.28
SF3A3-208ENST00000489537 FMNL3Q8IVF7 1028 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 VSTM4Q8IW00 320 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 LRRC8AQ8IWT6 810 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 ADSSL1Q8N142 457 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 GUF1Q8N442 669 aaKnown RBP7.08□□□□□ -1.28
SF3A3-208ENST00000489537 SPC24Q8NBT2 197 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 ZNF280CQ8ND82 737 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 RDM1Q8NG50 284 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 PRR7Q8TB68 274 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 KIAA1524Q8TCG1 905 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 GTF3C2Q8WUA4 911 aaPredicted RBP7.08□□□□□ -1.28
SF3A3-208ENST00000489537 CRYGNQ8WXF5 182 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 RAD54LQ92698 747 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 KIFC2Q96AC6 838 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 DCPSQ96C86 337 aaKnown RBP7.08□□□□□ -1.28
SF3A3-208ENST00000489537 TBC1D22BQ9NU19 505 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 FANCLQ9NW38 375 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 ZNHIT6Q9NWK9 470 aaKnown RBP7.08□□□□□ -1.28
SF3A3-208ENST00000489537 SEL1LQ9UBV2 794 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 FBXO40Q9UH90 709 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 LIMA1Q9UHB6 759 aaKnown RBP7.08□□□□□ -1.28
SF3A3-208ENST00000489537 CCPG1Q9ULG6 757 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 PPP1R9AQ9ULJ8 1098 aa7.08□□□□□ -1.28
SF3A3-208ENST00000489537 MKI67P46013 3256 aaKnown RBP7.07□□□□□ -1.28
SF3A3-208ENST00000489537 CENPFP49454 3210 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 A0A1W2PQC6 194 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 A0A1W2PRG0 241 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 FAM196BA6NMK8 535 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 USP17L15C9J2P7 530 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 USP17L13C9JLJ4 530 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 USP17L11C9JVI0 530 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 USP17L18D6R9N7 530 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 USP17L22D6RA61 530 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 USP17L17D6RBQ6 530 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 USP17L19D6RCP7 530 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 USP17L20D6RJB6 530 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 ATP2A1O14983 1001 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 TDP2O95551 362 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 CFBP00751 764 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 KRT18P05783 430 aaKnown RBP7.07□□□□□ -1.28
SF3A3-208ENST00000489537 RPL13P26373 211 aaKnown RBP7.07□□□□□ -1.28
SF3A3-208ENST00000489537 SFNP31947 248 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 DNM2P50570 870 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 HSD17B4P51659 736 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 USP17L24Q0WX57 530 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 PPP2R5CQ13362 524 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 CUL4BQ13620 913 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 ALCAMQ13740 583 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 COG2Q14746 738 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 IL17AQ16552 155 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 UBE2SQ16763 222 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 USH1GQ495M9 461 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 NAALADL2Q58DX5 795 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 FKBP15Q5T1M5 1219 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 USP17L6PQ6QN14 398 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 TMC6Q7Z403 805 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 FILIP1Q7Z7B0 1213 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 CLEC10AQ8IUN9 316 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 ZNF397Q8NF99 534 aaPredicted RBP7.07□□□□□ -1.28
SF3A3-208ENST00000489537 NELFBQ8WX92 580 aa7.07□□□□□ -1.28
SF3A3-208ENST00000489537 ABHD8Q96I13 439 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms