RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 PLIN2Q99541 437 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 C7orf25Q9BPX7 421 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 VTA1Q9NP79 307 aa17.78■□□□□ 0.44
SYNE1-227ENST00000489156 ADCY5O95622 1261 aa17.77■□□□□ 0.43
SYNE1-227ENST00000489156 HMGCRP04035 888 aa17.77■□□□□ 0.43
SYNE1-227ENST00000489156 RPN1P04843 607 aaKnown RBP17.77■□□□□ 0.43
SYNE1-227ENST00000489156 CACNB2Q08289 660 aaPredicted RBP17.77■□□□□ 0.43
SYNE1-227ENST00000489156 SLAIN1Q8ND83 568 aa17.77■□□□□ 0.43
SYNE1-227ENST00000489156 LRRC15Q8TF66 581 aa17.77■□□□□ 0.43
SYNE1-227ENST00000489156 LARP4BQ92615 738 aaKnown RBP17.77■□□□□ 0.43
SYNE1-227ENST00000489156 RIT2Q99578 217 aa17.77■□□□□ 0.43
SYNE1-227ENST00000489156 BLZF1Q9H2G9 400 aa17.77■□□□□ 0.43
SYNE1-227ENST00000489156 BLOC1S4Q9NUP1 217 aa17.77■□□□□ 0.43
SYNE1-227ENST00000489156 PKD2L1Q9P0L9 805 aa17.77■□□□□ 0.43
SYNE1-227ENST00000489156 PSMD10O75832 226 aa17.76■□□□□ 0.43
SYNE1-227ENST00000489156 ZNF865P0CJ78 1059 aaPredicted RBP17.76■□□□□ 0.43
SYNE1-227ENST00000489156 RPA1P27694 616 aa17.76■□□□□ 0.43
SYNE1-227ENST00000489156 CASP1P29466 404 aa17.76■□□□□ 0.43
SYNE1-227ENST00000489156 CCT6AP40227 531 aaKnown RBP17.76■□□□□ 0.43
SYNE1-227ENST00000489156 MYL5Q02045 173 aa17.76■□□□□ 0.43
SYNE1-227ENST00000489156 PPP2R5CQ13362 524 aa17.76■□□□□ 0.43
SYNE1-227ENST00000489156 TMEM63BQ5T3F8 832 aa17.76■□□□□ 0.43
SYNE1-227ENST00000489156 CNNM4Q6P4Q7 775 aa17.76■□□□□ 0.43
SYNE1-227ENST00000489156 RAD54LQ92698 747 aa17.76■□□□□ 0.43
SYNE1-227ENST00000489156 TRIM9Q9C026 710 aa17.76■□□□□ 0.43
SYNE1-227ENST00000489156 VAV3Q9UKW4 847 aa17.76■□□□□ 0.43
SYNE1-227ENST00000489156 SPATA31C2B4DYI2 1134 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 ATP9AO75110 1047 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 ARIH2O95376 493 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 ICAM3P32942 547 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 ADCYAP1R1P41586 468 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 PLCB2Q00722 1185 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 CCDC144BQ3MJ40 725 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 ZNF658Q5TYW1 1059 aaPredicted RBP17.75■□□□□ 0.43
SYNE1-227ENST00000489156 LRCH2Q5VUJ6 765 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 TRPV1Q8NER1 839 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 SH3TC2Q8TF17 1288 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 CCDC47Q96A33 483 aaKnown RBP17.75■□□□□ 0.43
SYNE1-227ENST00000489156 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.75■□□□□ 0.43
SYNE1-227ENST00000489156 MAFGO15525 162 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 CYBAP13498 195 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 PRKAR2AP13861 404 aaKnown RBP17.75■□□□□ 0.43
SYNE1-227ENST00000489156 SP2Q02086 613 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 NCAPHQ15003 741 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 LY6KQ17RY6 165 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 ENOX1Q8TC92 643 aaKnown RBP17.75■□□□□ 0.43
SYNE1-227ENST00000489156 SCFD2Q8WU76 684 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 CDHR1Q96JP9 859 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 ZNF577Q9BSK1 485 aa17.75■□□□□ 0.43
SYNE1-227ENST00000489156 POLR3CQ9BUI4 534 aaPredicted RBP17.75■□□□□ 0.43
SYNE1-227ENST00000489156 AGO4Q9HCK5 861 aaKnown RBP17.75■□□□□ 0.43
SYNE1-227ENST00000489156 IPO5O00410 1097 aaKnown RBP17.74■□□□□ 0.43
SYNE1-227ENST00000489156 AP5Z1O43299 807 aa17.74■□□□□ 0.43
SYNE1-227ENST00000489156 RHOBTB3O94955 611 aa17.74■□□□□ 0.43
SYNE1-227ENST00000489156 INHAP05111 366 aa17.74■□□□□ 0.43
SYNE1-227ENST00000489156 TXNP10599 105 aaKnown RBP17.74■□□□□ 0.43
SYNE1-227ENST00000489156 MUTP22033 750 aa17.74■□□□□ 0.43
SYNE1-227ENST00000489156 BCAS3Q9H6U6 928 aa17.74■□□□□ 0.43
SYNE1-227ENST00000489156 PRDM10Q9NQV6 1147 aa17.74■□□□□ 0.43
SYNE1-227ENST00000489156 DDX41Q9UJV9 622 aaKnown RBP17.74■□□□□ 0.43
SYNE1-227ENST00000489156 PVALEFA0A1B0GWK0 134 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 RBM47A0AV96 593 aaKnown RBP17.73■□□□□ 0.43
SYNE1-227ENST00000489156 SORBS3O60504 671 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 GAS7O60861 476 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 TGFB3P10600 412 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 PTGS1P23219 599 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 CNGA1P29973 690 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 TTLL4Q14679 1199 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 HS1BP3Q53T59 392 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 GJC2Q5T442 439 aaPredicted RBP17.73■□□□□ 0.43
SYNE1-227ENST00000489156 NCAPH2Q6IBW4 605 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 CCDC62Q6P9F0 684 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 CATSPER3Q86XQ3 398 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 TRIM44Q96DX7 344 aaPredicted RBP17.73■□□□□ 0.43
SYNE1-227ENST00000489156 ADCY6O43306 1168 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 KLRC4O43908 158 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 KCNA2P16389 499 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 CCND3P30281 292 aaPredicted RBP17.73■□□□□ 0.43
SYNE1-227ENST00000489156 ITGB3BPQ13352 177 aaPredicted RBP17.73■□□□□ 0.43
SYNE1-227ENST00000489156 MCM6Q14566 821 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 ECM1Q16610 540 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 SLC9C1Q4G0N8 1177 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 MAP3K21Q5TCX8 1036 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 KCNV1Q6PIU1 500 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 FBXO46Q6PJ61 603 aaPredicted RBP17.73■□□□□ 0.43
SYNE1-227ENST00000489156 COPS5Q92905 334 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 TRIM5Q9C035 493 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 NRBP1Q9UHY1 535 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 KIAA1024Q9UPX6 916 aa17.73■□□□□ 0.43
SYNE1-227ENST00000489156 MED24O75448 989 aa17.72■□□□□ 0.43
SYNE1-227ENST00000489156 SPATA31C1P0DKV0 1188 aa17.72■□□□□ 0.43
SYNE1-227ENST00000489156 SMPD1P17405 629 aa17.72■□□□□ 0.43
SYNE1-227ENST00000489156 UBA1P22314 1058 aaKnown RBP17.72■□□□□ 0.43
SYNE1-227ENST00000489156 TNFAIP2Q03169 654 aa17.72■□□□□ 0.43
SYNE1-227ENST00000489156 PKN2Q16513 984 aaKnown RBP17.72■□□□□ 0.43
SYNE1-227ENST00000489156 KMT5BQ4FZB7 885 aa17.72■□□□□ 0.43
SYNE1-227ENST00000489156 IQSEC1Q6DN90 963 aa17.72■□□□□ 0.43
SYNE1-227ENST00000489156 B3GNT9Q6UX72 402 aa17.72■□□□□ 0.43
SYNE1-227ENST00000489156 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.72■□□□□ 0.43
SYNE1-227ENST00000489156 TEKT3Q9BXF9 490 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms