RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 ZNF214Q9UL59 606 aaPredicted RBP7.98□□□□□ -1.13
HDAC3-209ENST00000486618 SH3BP1Q9Y3L3 701 aa7.98□□□□□ -1.13
HDAC3-209ENST00000486618 CTDP1Q9Y5B0 961 aaPredicted RBP7.98□□□□□ -1.13
HDAC3-209ENST00000486618 PCDHGC4Q9Y5F7 938 aa7.98□□□□□ -1.13
HDAC3-209ENST00000486618 SLC4A7Q9Y6M7 1214 aa7.98□□□□□ -1.13
HDAC3-209ENST00000486618 MCM3APO60318 1980 aa7.98□□□□□ -1.13
HDAC3-209ENST00000486618 GBF1Q92538 1859 aa7.98□□□□□ -1.13
HDAC3-209ENST00000486618 CDH23Q9H251 3354 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 MYADML2A6NDP7 307 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 ERC2O15083 957 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 CABYRO75952 493 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 CYP2D6P10635 497 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 BMP4P12644 408 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 EEF2P13639 858 aaKnown RBP7.97□□□□□ -1.13
HDAC3-209ENST00000486618 PDE6AP16499 860 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 CYP2C18P33260 490 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 TXLNAP40222 546 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 CDK8P49336 464 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 TEAD4Q15561 434 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 CCDC144BQ3MJ40 725 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 FAM83BQ5T0W9 1011 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 SNRNP48Q6IEG0 339 aaKnown RBP7.97□□□□□ -1.13
HDAC3-209ENST00000486618 C1orf229Q6ZS94 237 aaPredicted RBP7.97□□□□□ -1.13
HDAC3-209ENST00000486618 GET4Q7L5D6 327 aaPredicted RBP7.97□□□□□ -1.13
HDAC3-209ENST00000486618 AACSQ86V21 672 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 CLEC10AQ8IUN9 316 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 CREBRFQ8IUR6 639 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 SIX5Q8N196 739 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 MICALL1Q8N3F8 863 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 TMEM151AQ8N4L1 468 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 DYNLL2Q96FJ2 89 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 SLF1Q9BQI6 1058 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 HIPK3Q9H422 1215 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 FBXO40Q9UH90 709 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 HCN2Q9UL51 889 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 COG5Q9UP83 839 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 PCDHA11Q9Y5I1 949 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 ZNF532Q9HCE3 1301 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 MUC6Q6W4X9 2439 aa7.97□□□□□ -1.13
HDAC3-209ENST00000486618 BAZ2AQ9UIF9 1905 aaKnown RBP7.96□□□□□ -1.13
HDAC3-209ENST00000486618 DNAJC25-GNG10A0A024R161 153 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.96□□□□□ -1.14
HDAC3-209ENST00000486618 DCDC2BA2VCK2 349 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 PALM3A6NDB9 673 aaPredicted RBP7.96□□□□□ -1.14
HDAC3-209ENST00000486618 ATP2A1O14983 1001 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 ATXN7O15265 892 aaPredicted RBP7.96□□□□□ -1.14
HDAC3-209ENST00000486618 ZEB2O60315 1214 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 ZBED4O75132 1171 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 CD4P01730 458 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 POU3F3P20264 500 aaPredicted RBP7.96□□□□□ -1.14
HDAC3-209ENST00000486618 NOS2P35228 1153 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 NKX3-2P78367 333 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 TMEM31Q5JXX7 168 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 C12orf60Q5U649 245 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 KANK3Q6NY19 840 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 OTOP2Q7RTS6 562 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 ANKRD35Q8N283 1001 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 LCORLQ8N3X6 602 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 TMEM57Q8N5G2 664 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 PRPF38AQ8NAV1 312 aaKnown RBP7.96□□□□□ -1.14
HDAC3-209ENST00000486618 REPS2Q8NFH8 660 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 NECAB3Q96P71 396 aaPredicted RBP7.96□□□□□ -1.14
HDAC3-209ENST00000486618 RPS6KC1Q96S38 1066 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 LRFN3Q9BTN0 628 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 TFIP11Q9UBB9 837 aaKnown RBP7.96□□□□□ -1.14
HDAC3-209ENST00000486618 GDF2Q9UK05 429 aaPredicted RBP7.96□□□□□ -1.14
HDAC3-209ENST00000486618 TPX2Q9ULW0 747 aaKnown RBP7.96□□□□□ -1.14
HDAC3-209ENST00000486618 YBX2Q9Y2T7 364 aaKnown RBP7.96□□□□□ -1.14
HDAC3-209ENST00000486618 MAFBQ9Y5Q3 323 aaPredicted RBP7.96□□□□□ -1.14
HDAC3-209ENST00000486618 CNTNAP5Q8WYK1 1306 aa7.96□□□□□ -1.14
HDAC3-209ENST00000486618 SHISA8B8ZZ34 492 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 USP17L12C9JPN9 530 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 USP17L21D6R901 530 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 DKK1O94907 266 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 PFKMP08237 780 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 MAPTP10636 758 aaKnown RBP7.95□□□□□ -1.14
HDAC3-209ENST00000486618 ATP2A2P16615 1042 aaKnown RBP7.95□□□□□ -1.14
HDAC3-209ENST00000486618 RFX1P22670 979 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 ERCC5P28715 1186 aaPredicted RBP7.95□□□□□ -1.14
HDAC3-209ENST00000486618 KCNQ1P51787 676 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 CCL23P55773 120 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 POU5F1Q01860 360 aaKnown RBP7.95□□□□□ -1.14
HDAC3-209ENST00000486618 TNFAIP2Q03169 654 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 TFF2Q03403 129 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 ITGA7Q13683 1181 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 TMEM67Q5HYA8 995 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 SH3PXD2AQ5TCZ1 1133 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 B4GALNT3Q6L9W6 998 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 C16orf86Q6ZW13 317 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 ARMCX2Q7L311 632 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 CPXCR1Q8N123 301 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 GOLGA6L1Q8N7Z2 621 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 SLC43A3Q8NBI5 491 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 CHST13Q8NET6 341 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.95□□□□□ -1.14
HDAC3-209ENST00000486618 AP5M1Q9H0R1 490 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 ARMT1Q9H993 441 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 TNNQ9UQP3 1299 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 BRWD1Q9NSI6 2320 aa7.95□□□□□ -1.14
HDAC3-209ENST00000486618 MUC3AQ02505 3323 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms