RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 TELO2Q9Y4R8 837 aa22.29■■□□□ 1.16
COL9A3-204ENST00000463487 MARK3P27448 753 aa22.28■■□□□ 1.16
COL9A3-204ENST00000463487 TXKP42681 527 aa22.28■■□□□ 1.16
COL9A3-204ENST00000463487 MTMR9Q96QG7 549 aa22.28■■□□□ 1.16
COL9A3-204ENST00000463487 TMEM39AQ9NV64 488 aa22.28■■□□□ 1.16
COL9A3-204ENST00000463487 PCDHB6Q9Y5E3 794 aa22.28■■□□□ 1.16
COL9A3-204ENST00000463487 C17orf102A2RUQ5 167 aa22.27■■□□□ 1.16
COL9A3-204ENST00000463487 WNT7AO00755 349 aa22.27■■□□□ 1.16
COL9A3-204ENST00000463487 B4GALT4O60513 344 aa22.27■■□□□ 1.16
COL9A3-204ENST00000463487 SMIM10L2AP0DMW4 78 aa22.27■■□□□ 1.16
COL9A3-204ENST00000463487 SMIM10L2BP0DMW5 78 aa22.27■■□□□ 1.16
COL9A3-204ENST00000463487 TOB1P50616 345 aaPredicted RBP22.27■■□□□ 1.16
COL9A3-204ENST00000463487 NCAPH2Q6IBW4 605 aa22.27■■□□□ 1.16
COL9A3-204ENST00000463487 CCDC60Q8IWA6 550 aaPredicted RBP22.27■■□□□ 1.16
COL9A3-204ENST00000463487 CCDC155Q8N6L0 562 aa22.27■■□□□ 1.16
COL9A3-204ENST00000463487 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.27■■□□□ 1.16
COL9A3-204ENST00000463487 HDAC6Q9UBN7 1215 aa22.27■■□□□ 1.16
COL9A3-204ENST00000463487 GABBR1Q9UBS5 961 aa22.27■■□□□ 1.16
COL9A3-204ENST00000463487 VAV3Q9UKW4 847 aa22.27■■□□□ 1.16
COL9A3-204ENST00000463487 ALPK3Q96L96 1907 aa22.27■■□□□ 1.16
COL9A3-204ENST00000463487 NRCAMQ92823 1304 aa22.27■■□□□ 1.16
COL9A3-204ENST00000463487 MKI67P46013 3256 aaKnown RBP22.26■■□□□ 1.15
COL9A3-204ENST00000463487 POTEB3A0JP26 581 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 RRN3P2A6NIE6 340 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 CD4P01730 458 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 FAAP100Q0VG06 881 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 RESTQ13127 1097 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 PPFIA1Q13136 1202 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 PTGDRQ13258 359 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 NBR1Q14596 966 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 PTGISQ16647 500 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 POTEBQ6S5H4 581 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 B3GNT9Q6UX72 402 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 NEK9Q8TD19 979 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 PCYT2Q99447 389 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 PDLIM7Q9NR12 457 aa22.26■■□□□ 1.15
COL9A3-204ENST00000463487 MAFBQ9Y5Q3 323 aaPredicted RBP22.26■■□□□ 1.15
COL9A3-204ENST00000463487 HBP1O60381 514 aa22.25■■□□□ 1.15
COL9A3-204ENST00000463487 PRPHP41219 470 aa22.25■■□□□ 1.15
COL9A3-204ENST00000463487 EPHA7Q15375 998 aa22.25■■□□□ 1.15
COL9A3-204ENST00000463487 ERMNQ8TAM6 284 aa22.25■■□□□ 1.15
COL9A3-204ENST00000463487 ATP8B4Q8TF62 1192 aa22.25■■□□□ 1.15
COL9A3-204ENST00000463487 TMEM60Q9H2L4 133 aa22.25■■□□□ 1.15
COL9A3-204ENST00000463487 RNPEPQ9H4A4 650 aa22.25■■□□□ 1.15
COL9A3-204ENST00000463487 STK24Q9Y6E0 443 aa22.25■■□□□ 1.15
COL9A3-204ENST00000463487 IGSF9BQ9UPX0 1349 aa22.25■■□□□ 1.15
COL9A3-204ENST00000463487 ZSCAN22P10073 491 aaPredicted RBP22.24■■□□□ 1.15
COL9A3-204ENST00000463487 PSMC5P62195 406 aa22.24■■□□□ 1.15
COL9A3-204ENST00000463487 GDF6Q6KF10 455 aaPredicted RBP22.24■■□□□ 1.15
COL9A3-204ENST00000463487 BBXQ8WY36 941 aaPredicted RBP22.24■■□□□ 1.15
COL9A3-204ENST00000463487 LBHD1Q9BQE6 289 aaPredicted RBP22.24■■□□□ 1.15
COL9A3-204ENST00000463487 TRPV6Q9H1D0 765 aa22.24■■□□□ 1.15
COL9A3-204ENST00000463487 NRBP2Q9NSY0 501 aa22.24■■□□□ 1.15
COL9A3-204ENST00000463487 TRMT13Q9NUP7 481 aaKnown RBP22.24■■□□□ 1.15
COL9A3-204ENST00000463487 MYH9P35579 1960 aaKnown RBP22.24■■□□□ 1.15
COL9A3-204ENST00000463487 KIAA0355O15063 1070 aa22.23■■□□□ 1.15
COL9A3-204ENST00000463487 P4HBP07237 508 aaKnown RBP22.23■■□□□ 1.15
COL9A3-204ENST00000463487 RAG1P15918 1043 aa22.23■■□□□ 1.15
COL9A3-204ENST00000463487 QARSP47897 775 aaKnown RBP22.23■■□□□ 1.15
COL9A3-204ENST00000463487 BFSP2Q13515 415 aa22.23■■□□□ 1.15
COL9A3-204ENST00000463487 PLCB4Q15147 1175 aa22.23■■□□□ 1.15
COL9A3-204ENST00000463487 DTHD1Q6ZMT9 781 aa22.23■■□□□ 1.15
COL9A3-204ENST00000463487 COL1A2P08123 1366 aa22.23■■□□□ 1.15
COL9A3-204ENST00000463487 RPLP2P05387 115 aaKnown RBP22.22■■□□□ 1.15
COL9A3-204ENST00000463487 TECP42680 631 aa22.22■■□□□ 1.15
COL9A3-204ENST00000463487 FXR2P51116 673 aaKnown RBP eCLIP22.22■■□□□ 1.15
COL9A3-204ENST00000463487 ATP2C1P98194 919 aaPredicted RBP22.22■■□□□ 1.15
COL9A3-204ENST00000463487 PRKCEQ02156 737 aa22.22■■□□□ 1.15
COL9A3-204ENST00000463487 SPIRE1Q08AE8 756 aa22.22■■□□□ 1.15
COL9A3-204ENST00000463487 PTK7Q13308 1070 aa22.22■■□□□ 1.15
COL9A3-204ENST00000463487 GRIK4Q16099 956 aa22.22■■□□□ 1.15
COL9A3-204ENST00000463487 ARL6IP4Q66PJ3 421 aaKnown RBP22.22■■□□□ 1.15
COL9A3-204ENST00000463487 HAUS3Q68CZ6 603 aa22.22■■□□□ 1.15
COL9A3-204ENST00000463487 CAGE1Q8TC20 777 aa22.22■■□□□ 1.15
COL9A3-204ENST00000463487 PPP1R13LQ8WUF5 828 aa22.22■■□□□ 1.15
COL9A3-204ENST00000463487 LMBR1Q8WVP7 490 aa22.22■■□□□ 1.15
COL9A3-204ENST00000463487 ZNF396Q96N95 335 aaPredicted RBP22.22■■□□□ 1.15
COL9A3-204ENST00000463487 HIPK3Q9H422 1215 aa22.22■■□□□ 1.15
COL9A3-204ENST00000463487 SETD4Q9NVD3 440 aa22.22■■□□□ 1.15
COL9A3-204ENST00000463487 TBX21Q9UL17 535 aa22.22■■□□□ 1.15
COL9A3-204ENST00000463487 ZMYND8Q9ULU4 1186 aaPredicted RBP22.22■■□□□ 1.15
COL9A3-204ENST00000463487 KAT6AQ92794 2004 aa22.21■■□□□ 1.15
COL9A3-204ENST00000463487 EML1O00423 815 aa22.21■■□□□ 1.15
COL9A3-204ENST00000463487 OATP04181 439 aa22.21■■□□□ 1.15
COL9A3-204ENST00000463487 INSRRP14616 1297 aa22.21■■□□□ 1.15
COL9A3-204ENST00000463487 HOXC8P31273 242 aa22.21■■□□□ 1.15
COL9A3-204ENST00000463487 PDIA5Q14554 519 aa22.21■■□□□ 1.15
COL9A3-204ENST00000463487 XKR3Q5GH77 459 aa22.21■■□□□ 1.15
COL9A3-204ENST00000463487 ZNF484Q5JVG2 852 aa22.21■■□□□ 1.15
COL9A3-204ENST00000463487 RETREG2Q8NC44 543 aa22.21■■□□□ 1.15
COL9A3-204ENST00000463487 ZSWIM4Q9H7M6 989 aa22.21■■□□□ 1.15
COL9A3-204ENST00000463487 TUBE1Q9UJT0 475 aa22.21■■□□□ 1.15
COL9A3-204ENST00000463487 POTEMA6NI47 508 aa22.2■■□□□ 1.14
COL9A3-204ENST00000463487 F13A1P00488 732 aa22.2■■□□□ 1.14
COL9A3-204ENST00000463487 SYN1P17600 705 aa22.2■■□□□ 1.14
COL9A3-204ENST00000463487 IGBP1P78318 339 aa22.2■■□□□ 1.14
COL9A3-204ENST00000463487 SF3A1Q15459 793 aaKnown RBP22.2■■□□□ 1.14
COL9A3-204ENST00000463487 TAF2Q6P1X5 1199 aa22.2■■□□□ 1.14
COL9A3-204ENST00000463487 C4orf32Q8N8J7 132 aa22.2■■□□□ 1.14
COL9A3-204ENST00000463487 BANK1Q8NDB2 785 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms