RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 TDP2O95551 362 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 RPLP2P05387 115 aaKnown RBP18.5■□□□□ 0.55
SF3A1-204ENST00000447376 SFNP31947 248 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 FXR1P51114 621 aaKnown RBP eCLIP18.5■□□□□ 0.55
SF3A1-204ENST00000447376 JAK3P52333 1124 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 PDXDC2PQ6P474 469 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 LRRC8DQ7L1W4 858 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 SERINC5Q86VE9 423 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 HSCBQ8IWL3 235 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 OXER1Q8TDS5 423 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 UIMC1Q96RL1 719 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.5■□□□□ 0.552e-12■□□□□ 8.5
SF3A1-204ENST00000447376 FTOQ9C0B1 505 aaKnown RBP eCLIP18.5■□□□□ 0.55
SF3A1-204ENST00000447376 WNT8AQ9H1J5 351 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 SMC3Q9UQE7 1217 aa18.5■□□□□ 0.55
SF3A1-204ENST00000447376 TRIOBPQ9H2D6 2365 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 K7ELQ4 463 aaPredicted RBP18.49■□□□□ 0.55
SF3A1-204ENST00000447376 DHX15O43143 795 aaKnown RBP18.49■□□□□ 0.55
SF3A1-204ENST00000447376 IQCF3P0C7M6 154 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 ACRP10323 421 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 THPOP40225 353 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 ZNF200P98182 395 aaPredicted RBP18.49■□□□□ 0.55
SF3A1-204ENST00000447376 RBL2Q08999 1139 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 NR5A1Q13285 461 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 GRIK4Q16099 956 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 C9orf50Q5SZB4 431 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 PPP4R3AQ6IN85 833 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 SWSAP1Q6NVH7 229 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 ABHD15Q6UXT9 468 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 ZNF365Q70YC5 407 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 DEFB128Q7Z7B8 93 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 LMBR1Q8WVP7 490 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 SLC5A5Q92911 643 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 LENG9Q96B70 501 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 TUBE1Q9UJT0 475 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 TELO2Q9Y4R8 837 aa18.49■□□□□ 0.55
SF3A1-204ENST00000447376 POTEB3A0JP26 581 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 ZBBXA8MT70 800 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 BTBD18B2RXH4 712 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 TREHO43280 583 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 CHMP2AO43633 222 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 CCNE2O96020 404 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 CKBP12277 381 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 HOXC8P31273 242 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 EPHB4P54760 987 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 IGBP1P78318 339 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 GUCY1B3Q02153 619 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 TMEM240Q5SV17 173 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 TAF2Q6P1X5 1199 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 POTEBQ6S5H4 581 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 MIER3Q7Z3K6 550 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 RDM1Q8NG50 284 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 FAM167AQ96KS9 214 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 FAM20AQ96MK3 541 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 DISC1Q9NRI5 854 aa18.48■□□□□ 0.55
SF3A1-204ENST00000447376 TBX3O15119 743 aa18.47■□□□□ 0.55
SF3A1-204ENST00000447376 HBP1O60381 514 aa18.47■□□□□ 0.55
SF3A1-204ENST00000447376 CUL4AQ13619 759 aa18.47■□□□□ 0.55
SF3A1-204ENST00000447376 CCDC60Q8IWA6 550 aaPredicted RBP18.47■□□□□ 0.55
SF3A1-204ENST00000447376 SLFN12Q8IYM2 578 aa18.47■□□□□ 0.55
SF3A1-204ENST00000447376 DHX38Q92620 1227 aaKnown RBP18.47■□□□□ 0.55
SF3A1-204ENST00000447376 MBOAT7Q96N66 472 aa18.47■□□□□ 0.55
SF3A1-204ENST00000447376 TANC1Q9C0D5 1861 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 KAT6AQ92794 2004 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 IGKV6D-21A0A0A0MT36 114 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 RSPH10B2B2RC85 870 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 M0QZ92 97 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 RSPH10BP0C881 870 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 INSRRP14616 1297 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 GJB2P29033 226 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 PLCB4Q15147 1175 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 GPR153Q6NV75 609 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 OTOP2Q7RTS6 562 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 FBXO18Q8NFZ0 1043 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 ATP8B4Q8TF62 1192 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 BBXQ8WY36 941 aaPredicted RBP18.46■□□□□ 0.55
SF3A1-204ENST00000447376 HERVK_113Q902F9 699 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 INTS4Q96HW7 963 aaKnown RBP18.46■□□□□ 0.55
SF3A1-204ENST00000447376 CTAGE1Q96RT6 745 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 PCYT2Q99447 389 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 FOXP1Q9H334 677 aaPredicted RBP18.46■□□□□ 0.55
SF3A1-204ENST00000447376 GABBR1Q9UBS5 961 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 CEP131Q9UPN4 1083 aa18.46■□□□□ 0.55
SF3A1-204ENST00000447376 COL1A2P08123 1366 aa18.45■□□□□ 0.54
SF3A1-204ENST00000447376 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.45■□□□□ 0.54
SF3A1-204ENST00000447376 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.45■□□□□ 0.54
SF3A1-204ENST00000447376 PSMD10O75832 226 aa18.45■□□□□ 0.54
SF3A1-204ENST00000447376 ZNF484Q5JVG2 852 aa18.45■□□□□ 0.54
SF3A1-204ENST00000447376 ZNF618Q5T7W0 954 aa18.45■□□□□ 0.54
SF3A1-204ENST00000447376 ETNPPLQ8TBG4 499 aa18.45■□□□□ 0.54
SF3A1-204ENST00000447376 NRBP2Q9NSY0 501 aa18.45■□□□□ 0.54
SF3A1-204ENST00000447376 NOL7Q9UMY1 257 aaKnown RBP18.45■□□□□ 0.54
SF3A1-204ENST00000447376 SLC4A7Q9Y6M7 1214 aa18.45■□□□□ 0.54
SF3A1-204ENST00000447376 H3BQV1 296 aa18.44■□□□□ 0.54
SF3A1-204ENST00000447376 SLC37A4O43826 429 aa18.44■□□□□ 0.54
SF3A1-204ENST00000447376 DKC1O60832 514 aaKnown RBP eCLIP18.44■□□□□ 0.54
SF3A1-204ENST00000447376 HSP90AA1P07900 732 aaKnown RBP18.44■□□□□ 0.54
SF3A1-204ENST00000447376 KCNJ6P48051 423 aa18.44■□□□□ 0.54
SF3A1-204ENST00000447376 SMAD3P84022 425 aaKnown RBP18.44■□□□□ 0.54
SF3A1-204ENST00000447376 HIC1Q14526 733 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms