RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 COA1Q9GZY4 146 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 DHX36Q9H2U1 1008 aaKnown RBP14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 RGL1Q9NZL6 768 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 HDAC9Q9UKV0 1011 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 POLRMTO00411 1230 aaKnown RBP14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 ZBTB39O15060 712 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 ATP1A2P50993 1020 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 NAB2Q15742 525 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 KSR1Q8IVT5 923 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 PIGOQ8TEQ8 1089 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 KCNMB3Q9NPA1 279 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 PCDHB13Q9Y5F0 798 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 KCNK3O14649 394 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 HOXD13P35453 343 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 CERKLQ49MI3 558 aaPredicted RBP14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 BHMT2Q9H2M3 363 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 SWAP70Q9UH65 585 aa14.89□□□□□ -0.03
HERPUD1-204ENST00000439977 PLIN4Q96Q06 1357 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 KDM3AQ9Y4C1 1321 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 AKAP3O75969 853 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 GCFC2P16383 781 aaKnown RBP14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 GIT2Q14161 759 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 ZNF571Q7Z3V5 609 aaPredicted RBP14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 CCDC43Q96MW1 224 aaKnown RBP14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 RUFY1Q96T51 708 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 GRID2IPA4D2P6 1211 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 CHMP2AO43633 222 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 HOXA10P31260 410 aaPredicted RBP14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 CRKP46108 304 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 EPHB4P54760 987 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 UBXN2AP68543 259 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 PPP1R18Q6NYC8 613 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 RNF10Q8N5U6 811 aaKnown RBP14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 CEP63Q96MT8 703 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 ZIM3Q96PE6 472 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 ARMCX3Q9UH62 379 aaPredicted RBP14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 AJAP1Q9UKB5 411 aaPredicted RBP14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 DNM3Q9UQ16 869 aa14.88□□□□□ -0.03
HERPUD1-204ENST00000439977 SPATA31C1P0DKV0 1188 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 CCT5P48643 541 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 IRAK1P51617 712 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 TTMPQ5BVD1 217 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 SIAH1Q8IUQ4 282 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 SP8Q8IXZ3 490 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 AP1M1Q9BXS5 423 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 GANQ9H2C0 597 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 RASSF4Q9H2L5 321 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 F5H6K3 240 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 RBAK-RBAKDNI3L0D1 243 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 GCNT3O95395 438 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 UCHL3P15374 230 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 KLRC3Q07444 240 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 SPIRE1Q08AE8 756 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 SEPT12Q8IYM1 358 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 RBM46Q8TBY0 533 aaKnown RBP14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 CRAMP1Q96RY5 1269 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 BCS1LQ9Y276 419 aa14.87□□□□□ -0.03
HERPUD1-204ENST00000439977 TMCO5BA8MYB1 307 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 HSF2BPO75031 334 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 TRIM37O94972 964 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 JAG1P78504 1218 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 EXOC3L4Q17RC7 722 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 KNOP1Q1ED39 458 aaKnown RBP14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 HYIQ5T013 277 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 ZNF572Q7Z3I7 529 aaPredicted RBP14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 GJD4Q96KN9 370 aaPredicted RBP14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 RUSC1Q9BVN2 902 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 EDEM3Q9BZQ6 932 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 GNGT1P63211 74 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 ICA1Q05084 483 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 CTTNQ14247 550 aaKnown RBP14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 SH3BP5LQ7L8J4 393 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 IRF2BP2Q7Z5L9 587 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 DDX42Q86XP3 938 aaKnown RBP eCLIP14.86□□□□□ -0.032e-8■■■■■ 39.1
HERPUD1-204ENST00000439977 ETNPPLQ8TBG4 499 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 CAPS2Q9BXY5 557 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 CDK5RAP2Q96SN8 1893 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 SPDYE3A6NKU9 549 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 EML1O00423 815 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 CEP104O60308 925 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 GNA14O95837 355 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 XRCC5P13010 732 aaKnown RBP14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 PON1P27169 355 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 ZNF76P36508 570 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 USP11P51784 963 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 ITIH3Q06033 890 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 PDCLQ13371 301 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 ZC2HC1CQ53FD0 456 aaPredicted RBP14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 MEI1Q5TIA1 1274 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 MEX3CQ5U5Q3 659 aaKnown RBP14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 CASKIN2Q8WXE0 1202 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 CENPHQ9H3R5 247 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 LUC7LQ9NQ29 371 aaKnown RBP14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 SAMM50Q9Y512 469 aa14.86□□□□□ -0.03
HERPUD1-204ENST00000439977 RAD51CO43502 376 aa14.85□□□□□ -0.03
HERPUD1-204ENST00000439977 ZEB2O60315 1214 aa14.85□□□□□ -0.03
HERPUD1-204ENST00000439977 PPFIA4O75335 1185 aa14.85□□□□□ -0.03
HERPUD1-204ENST00000439977 RPS6KA5O75582 802 aa14.85□□□□□ -0.03
HERPUD1-204ENST00000439977 ADRA2BP18089 450 aa14.85□□□□□ -0.03
HERPUD1-204ENST00000439977 IFT20Q8IY31 132 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms