RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 V9GY48 417 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-208ENST00000437607 GGPS1O95749 300 aa13.84□□□□□ -0.19
PTPRF-208ENST00000437607 HOXA13P31271 388 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-208ENST00000437607 ERVK-21P61565 698 aa13.84□□□□□ -0.19
PTPRF-208ENST00000437607 PFKFB3Q16875 520 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-208ENST00000437607 CELF3Q5SZQ8 465 aaKnown RBP13.84□□□□□ -0.19
PTPRF-208ENST00000437607 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.84□□□□□ -0.197e-8■□□□□ 9.6
PTPRF-208ENST00000437607 VSIG10LQ86VR7 867 aa13.84□□□□□ -0.19
PTPRF-208ENST00000437607 CCDC12Q8WUD4 166 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-208ENST00000437607 PIGSQ96S52 555 aa13.84□□□□□ -0.19
PTPRF-208ENST00000437607 C16orf70Q9BSU1 422 aa13.84□□□□□ -0.19
PTPRF-208ENST00000437607 OSBPL7Q9BZF2 842 aa13.84□□□□□ -0.19
PTPRF-208ENST00000437607 BRMS1Q9HCU9 246 aa13.84□□□□□ -0.19
PTPRF-208ENST00000437607 MTUS1Q9ULD2 1270 aa13.84□□□□□ -0.19
PTPRF-208ENST00000437607 WDFY4Q6ZS81 3184 aa13.83□□□□□ -0.19
PTPRF-208ENST00000437607 COL4A6Q14031 1691 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 ZBTB5O15062 677 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 PPFIA4O75335 1185 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 LGR5O75473 907 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 UBA1P22314 1058 aaKnown RBP13.83□□□□□ -0.2
PTPRF-208ENST00000437607 HOXC8P31273 242 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 PLA2G5P39877 138 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 GUCY1B3Q02153 619 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 GNL2Q13823 731 aaKnown RBP13.83□□□□□ -0.2
PTPRF-208ENST00000437607 IKBKEQ14164 716 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 SAFBQ15424 915 aaKnown RBP eCLIP13.83□□□□□ -0.2
PTPRF-208ENST00000437607 PPP1R18Q6NYC8 613 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 FAM117BQ6P1L5 589 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 SERINC5Q86VE9 423 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 AIFM3Q96NN9 605 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 C1QTNF1Q9BXJ1 281 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 MAP3K20Q9NYL2 800 aaKnown RBP13.83□□□□□ -0.2
PTPRF-208ENST00000437607 VPS54Q9P1Q0 977 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 PCDHA1Q9Y5I3 950 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 WDR81Q562E7 1941 aa13.83□□□□□ -0.2
PTPRF-208ENST00000437607 TTC3P53804 2025 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-208ENST00000437607 PNMA6FA0A0J9YX94 578 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 EFCAB14O75071 495 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 BRD1O95696 1058 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 ZSCAN22P10073 491 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-208ENST00000437607 NAPAP54920 295 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 PKP1Q13835 747 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 PKN1Q16512 942 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 FOXD4L5Q5VV16 416 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-208ENST00000437607 WWC2Q6AWC2 1192 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 MCTP1Q6DN14 999 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 FAM177A1Q8N128 213 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-208ENST00000437607 FOXD4L4Q8WXT5 416 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-208ENST00000437607 SPATA33Q96N06 139 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 TGS1Q96RS0 853 aaKnown RBP13.82□□□□□ -0.2
PTPRF-208ENST00000437607 LRFN3Q9BTN0 628 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 CD320Q9NPF0 282 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 C11orf16Q9NQ32 467 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 MTMR6Q9Y217 621 aa13.82□□□□□ -0.2
PTPRF-208ENST00000437607 F13A1P00488 732 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 THPOP40225 353 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 NLRP5P59047 1200 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 HTRA4P83105 476 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-208ENST00000437607 TRAF1Q13077 416 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 SEMA3FQ13275 785 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 PLEKHG4Q58EX7 1191 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 KCNV1Q6PIU1 500 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 SAMD3Q8N6K7 520 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 DBF4BQ8NFT6 615 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 FBXO18Q8NFZ0 1043 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 SP7Q8TDD2 431 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-208ENST00000437607 C17orf80Q9BSJ5 609 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 SH3GLB2Q9NR46 395 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 BARHL2Q9NY43 387 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 TELO2Q9Y4R8 837 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 ATP6V1DQ9Y5K8 247 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 FRMPD4Q14CM0 1322 aa13.81□□□□□ -0.2
PTPRF-208ENST00000437607 EVPLQ92817 2033 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 RSPH10B2B2RC85 870 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 STXBP3O00186 592 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 TREHO43280 583 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 MMP1P03956 469 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 LGALS2P05162 132 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 RSPH10BP0C881 870 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 SMIM10L2AP0DMW4 78 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 SMIM10L2BP0DMW5 78 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 TGFB3P10600 412 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 CCND2P30279 289 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 MRPS9P82933 396 aaKnown RBP13.8□□□□□ -0.2
PTPRF-208ENST00000437607 FCHSD1Q86WN1 690 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 RNPEPQ9H4A4 650 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 UBE2ZQ9H832 354 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-208ENST00000437607 INSL6Q9Y581 213 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 EMSYQ7Z589 1322 aa13.8□□□□□ -0.2
PTPRF-208ENST00000437607 MUC6Q6W4X9 2439 aa13.79□□□□□ -0.2
PTPRF-208ENST00000437607 PLXNA4Q9HCM2 1894 aa13.79□□□□□ -0.2
PTPRF-208ENST00000437607 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-208ENST00000437607 ESYT2A0FGR8 921 aa13.79□□□□□ -0.2
PTPRF-208ENST00000437607 C17orf102A2RUQ5 167 aa13.79□□□□□ -0.2
PTPRF-208ENST00000437607 H3BRB1 525 aa13.79□□□□□ -0.2
PTPRF-208ENST00000437607 GCOM1H8Y6P7 765 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-208ENST00000437607 POLR2MP0CAP2 368 aa13.79□□□□□ -0.2
PTPRF-208ENST00000437607 KRT2P35908 639 aa13.79□□□□□ -0.2
PTPRF-208ENST00000437607 FERMT3Q86UX7 667 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms