RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 DBPQ10586 325 aaPredicted RBP8.13□□□□□ -1.11
CCDC88A-206ENST00000430086 CPZQ66K79 652 aa8.13□□□□□ -1.11
CCDC88A-206ENST00000430086 LIPIQ6XZB0 460 aa8.13□□□□□ -1.11
CCDC88A-206ENST00000430086 WRNIP1Q96S55 665 aa8.13□□□□□ -1.11
CCDC88A-206ENST00000430086 DLL4Q9NR61 685 aa8.13□□□□□ -1.11
CCDC88A-206ENST00000430086 RBPJLQ9UBG7 517 aa8.13□□□□□ -1.11
CCDC88A-206ENST00000430086 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 ZNF839A8K0R7 811 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 FFAR3O14843 346 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 PDE8AO60658 829 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 HIP1RO75146 1068 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 F2P00734 622 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 SDHAP31040 664 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 SMAD4Q13485 552 aaKnown RBP8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 PCBP1Q15365 356 aaKnown RBP eCLIP8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 KRTAP19-4Q3LI73 84 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 LCE3BQ5TA77 95 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 PKN3Q6P5Z2 889 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 TMC5Q6UXY8 1006 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 STK32CQ86UX6 486 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 THNSL2Q86YJ6 484 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 LINC01356Q8N9X3 169 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 CLIC6Q96NY7 704 aa8.12□□□□□ -1.11
CCDC88A-206ENST00000430086 PRAMEF25A6NGN4 478 aa8.11□□□□□ -1.11
CCDC88A-206ENST00000430086 MASP1P48740 699 aa8.11□□□□□ -1.11
CCDC88A-206ENST00000430086 PFKPQ01813 784 aa8.11□□□□□ -1.11
CCDC88A-206ENST00000430086 PRR31Q5SQ13 230 aa8.11□□□□□ -1.11
CCDC88A-206ENST00000430086 CC2D1AQ6P1N0 951 aaPredicted RBP8.11□□□□□ -1.11
CCDC88A-206ENST00000430086 SIAH1Q8IUQ4 282 aa8.11□□□□□ -1.11
CCDC88A-206ENST00000430086 ZNF526Q8TF50 670 aaPredicted RBP8.11□□□□□ -1.11
CCDC88A-206ENST00000430086 PRKAB1Q9Y478 270 aa8.11□□□□□ -1.11
CCDC88A-206ENST00000430086 CYP7B1O75881 506 aa8.1□□□□□ -1.11
CCDC88A-206ENST00000430086 RPL13P26373 211 aaKnown RBP8.1□□□□□ -1.11
CCDC88A-206ENST00000430086 AOAHP28039 575 aa8.1□□□□□ -1.11
CCDC88A-206ENST00000430086 DSG1Q02413 1049 aa8.1□□□□□ -1.11
CCDC88A-206ENST00000430086 TTLL7Q6ZT98 887 aa8.1□□□□□ -1.11
CCDC88A-206ENST00000430086 TP53I13Q8NBR0 393 aaPredicted RBP8.1□□□□□ -1.11
CCDC88A-206ENST00000430086 IGDCC4Q8TDY8 1250 aa8.1□□□□□ -1.11
CCDC88A-206ENST00000430086 NTMQ9P121 344 aa8.1□□□□□ -1.11
CCDC88A-206ENST00000430086 BTBD7Q9P203 1132 aa8.1□□□□□ -1.11
CCDC88A-206ENST00000430086 ZKSCAN5Q9Y2L8 839 aa8.1□□□□□ -1.11
CCDC88A-206ENST00000430086 H7C1D1 291 aa8.09□□□□□ -1.11
CCDC88A-206ENST00000430086 DVL2O14641 736 aa8.09□□□□□ -1.11
CCDC88A-206ENST00000430086 FOXP2O15409 715 aa8.09□□□□□ -1.11
CCDC88A-206ENST00000430086 JAG1P78504 1218 aa8.09□□□□□ -1.11
CCDC88A-206ENST00000430086 RTP5Q14D33 572 aa8.09□□□□□ -1.11
CCDC88A-206ENST00000430086 SEPT7Q16181 437 aaKnown RBP8.09□□□□□ -1.11
CCDC88A-206ENST00000430086 SKIDA1Q1XH10 827 aa8.09□□□□□ -1.11
CCDC88A-206ENST00000430086 CREB3L3Q68CJ9 461 aa8.09□□□□□ -1.11
CCDC88A-206ENST00000430086 RNF180Q86T96 592 aa8.09□□□□□ -1.11
CCDC88A-206ENST00000430086 ACSS2Q9NR19 701 aa8.09□□□□□ -1.11
CCDC88A-206ENST00000430086 GAS7O60861 476 aa8.08□□□□□ -1.12
CCDC88A-206ENST00000430086 KRT37O76014 449 aa8.08□□□□□ -1.12
CCDC88A-206ENST00000430086 VIL1P09327 827 aaKnown RBP8.08□□□□□ -1.12
CCDC88A-206ENST00000430086 STAT3P40763 770 aa8.08□□□□□ -1.12
CCDC88A-206ENST00000430086 TMEM132BQ14DG7 1078 aa8.08□□□□□ -1.12
CCDC88A-206ENST00000430086 CATSPEREQ5SY80 951 aa8.08□□□□□ -1.12
CCDC88A-206ENST00000430086 NXPE1Q8N323 547 aa8.08□□□□□ -1.12
CCDC88A-206ENST00000430086 ASB15Q8WXK1 588 aa8.08□□□□□ -1.12
CCDC88A-206ENST00000430086 CAAP1Q9H8G2 361 aa8.08□□□□□ -1.12
CCDC88A-206ENST00000430086 SLC39A2Q9NP94 309 aa8.08□□□□□ -1.12
CCDC88A-206ENST00000430086 IFT57Q9NWB7 429 aa8.08□□□□□ -1.12
CCDC88A-206ENST00000430086 ARHGAP28Q9P2N2 729 aa8.08□□□□□ -1.12
CCDC88A-206ENST00000430086 ASB1Q9Y576 335 aa8.08□□□□□ -1.12
CCDC88A-206ENST00000430086 RASSF10A6NK89 507 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 ZNF891A8MT65 544 aaPredicted RBP8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 CHGBP05060 677 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 MMEP08473 750 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 ZSCAN22P10073 491 aaPredicted RBP8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 ATP2A2P16615 1042 aaKnown RBP8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 PTGS1P23219 599 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 FNTBP49356 437 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 SARSP49591 514 aaKnown RBP8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 SCNN1BP51168 640 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 KIF11P52732 1056 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 ZNF174Q15697 407 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 CARFQ8N187 725 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 KIAA1958Q8N8K9 716 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 OR2W6PQ8NHA6 318 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 ZSWIM3Q96MP5 696 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 OXSMQ9NWU1 459 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 ARHGAP20Q9P2F6 1191 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 SBNO2Q9Y2G9 1366 aa8.07□□□□□ -1.12
CCDC88A-206ENST00000430086 CYP17A1P05093 508 aa8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 ZNF28P17035 718 aa8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 DHCR24Q15392 516 aa8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 VMACQ2NL98 169 aa8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 SKOR2Q2VWA4 1001 aaPredicted RBP8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 LCNL1Q6ZST4 164 aa8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 KRT26Q7Z3Y9 468 aa8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 SMC1BQ8NDV3 1235 aa8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 LEO1Q8WVC0 666 aaPredicted RBP8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 GBP4Q96PP9 640 aa8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 PCIF1Q9H4Z3 704 aa8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 KCND1Q9NSA2 647 aa8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 CROTQ9UKG9 612 aa8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 SPO11Q9Y5K1 396 aa8.06□□□□□ -1.12
CCDC88A-206ENST00000430086 GOLGA6L22H0YM25 854 aa8.05□□□□□ -1.12
CCDC88A-206ENST00000430086 MPIG6BO95866 241 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms