RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 SMU1Q2TAY7 513 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CCSER2Q9H7U1 834 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 ZBTB11O95625 1053 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 STIP1P31948 543 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 SARSP49591 514 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 ANKMY2Q8IV38 441 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 UNC5CLQ8IV45 518 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 PASKQ96RG2 1323 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 SLC39A6Q13433 755 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CASKIN2Q8WXE0 1202 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 SH3GL2Q99962 352 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 WDR6Q9NNW5 1121 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CASP14P31944 242 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CCDC138Q96M89 665 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 DNAJC17Q9NVM6 304 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TMOD2Q9NZR1 351 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 PPIP5K2O43314 1243 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 BMP15O95972 392 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 ITGA2BP08514 1039 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 OTUD4Q01804 1114 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 PTH1RQ03431 593 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 ADAT2Q7Z6V5 191 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 APPL2Q8NEU8 664 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 SKA1Q96BD8 255 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TAF4O00268 1085 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 SESTD1Q86VW0 696 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 GALNT6Q8NCL4 622 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 RNF38Q9H0F5 515 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 FBXO2Q9UK22 296 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 SAMD9LQ8IVG5 1584 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 KPNB1Q14974 876 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 HIPK4Q8NE63 616 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 SNX27Q96L92 541 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CCDC159P0C7I6 412 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 KRT4P19013 534 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 IST1P53990 364 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 RPS6KA1Q15418 735 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 NEK5Q6P3R8 708 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TEX28O15482 410 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 GSTT2P0CG29 244 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 GSTT2BP0CG30 244 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 STX2P32856 288 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TRAPPC9Q96Q05 1148 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CNOT10Q9H9A5 744 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CDC42BPGQ6DT37 1551 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 GOLGA8MH3BSY2 632 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 S100A1P23297 94 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 PMS1P54277 932 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 UAP1Q16222 522 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CTC1Q2NKJ3 1217 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 MMEL1Q495T6 779 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 ANKRD44Q8N8A2 993 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 ZFAND2BQ8WV99 257 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 IFIH1Q9BYX4 1025 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 NLRC4Q9NPP4 1024 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TBK1Q9UHD2 729 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 EXOC7Q9UPT5 735 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 FRMPD1Q5SYB0 1578 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 SLC27A2O14975 620 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TCF3P15923 654 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 IFNA8P32881 189 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 INHBCP55103 352 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TTF1Q15361 905 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CCSER1Q9C0I3 900 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 MBIPQ9NS73 344 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 CMA1P23946 247 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 FHDC1Q9C0D6 1143 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 DUSP10Q9Y6W6 482 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 POC1B-GALNT4F8VUJ3 575 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 TMCC2O75069 709 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 ENOX1Q8TC92 643 aaKnown RBP3.68□□□□□ -1.82
SYNE1-212ENST00000423061 AGAP3Q96P47 875 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 FNBP1Q96RU3 617 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 DCUN1D5Q9BTE7 237 aa3.68□□□□□ -1.82
SYNE1-212ENST00000423061 ALDH1B1P30837 517 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 TMEM259Q4ZIN3 620 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 GID8Q9NWU2 228 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 H7C0C1 242 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 PSMD11O00231 422 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 MAP3K13O43283 966 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 BUB1O43683 1085 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 ENTPD5O75356 428 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 MAGEA1P43355 309 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 FKBP4Q02790 459 aaKnown RBP eCLIP3.67□□□□□ -1.82
SYNE1-212ENST00000423061 CEP126Q9P2H0 1117 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 DBR1Q9UK59 544 aaKnown RBP3.67□□□□□ -1.82
SYNE1-212ENST00000423061 TRAPPC3O43617 180 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 KRT36O76013 467 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 ARFIP2P53365 341 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 TRADDQ15628 312 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 CARTPTQ16568 116 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 PEX26Q7Z412 305 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 C2CD5Q86YS7 1000 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 KCND1Q9NSA2 647 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 MAN1B1Q9UKM7 699 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 POLR2DO15514 142 aaKnown RBP3.67□□□□□ -1.82
SYNE1-212ENST00000423061 KRT86O43790 486 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 DCTN3O75935 186 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 ABL1P00519 1130 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 IFI35P80217 286 aaPredicted RBP3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms