RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 NFASCO94856 1347 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 CDK5RAP2Q96SN8 1893 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 SLC16A3O15427 465 aaKnown RBP9.26□□□□□ -0.93
USP54-203ENST00000418501 FCER1AP12319 257 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 CYP4A11Q02928 519 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 PGM5Q15124 567 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 XKR9Q5GH70 373 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 CDKAL1Q5VV42 579 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 OTOP1Q7RTM1 612 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 APBB1IPQ7Z5R6 666 aaPredicted RBP9.26□□□□□ -0.93
USP54-203ENST00000418501 PARK7Q99497 189 aaKnown RBP9.26□□□□□ -0.93
USP54-203ENST00000418501 LXNQ9BS40 222 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 AGO4Q9HCK5 861 aaKnown RBP9.26□□□□□ -0.93
USP54-203ENST00000418501 TYW1Q9NV66 732 aaKnown RBP9.26□□□□□ -0.93
USP54-203ENST00000418501 MAPK8IP1Q9UQF2 711 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 SLC45A1Q9Y2W3 748 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 MYH4Q9Y623 1939 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 RPTORQ8N122 1335 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 FAM86B1E9PN63 330 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 DDX39AO00148 427 aaKnown RBP9.26□□□□□ -0.93
USP54-203ENST00000418501 NOP56O00567 594 aaKnown RBP9.26□□□□□ -0.93
USP54-203ENST00000418501 PSMD10O75832 226 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 LYPLA2O95372 231 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 FAM86B2P0C5J1 330 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 TGFB3P10600 412 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 DMP1Q13316 513 aaPredicted RBP9.26□□□□□ -0.93
USP54-203ENST00000418501 MYBPC2Q14324 1141 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 KRT31Q15323 416 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 BRDTQ58F21 947 aaPredicted RBP9.26□□□□□ -0.93
USP54-203ENST00000418501 OR8K1Q8NGG5 319 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 ZNF408Q9H9D4 720 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 MLXIPQ9HAP2 919 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 ARMCX3Q9UH62 379 aaPredicted RBP9.26□□□□□ -0.93
USP54-203ENST00000418501 UBXN2AP68543 259 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 JAG1P78504 1218 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 ADAM9Q13443 819 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 ODR4Q5SWX8 454 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 C4orf19Q8IY42 314 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 TAAR1Q96RJ0 339 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 MMP19Q99542 508 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 MOV10L1Q9BXT6 1211 aaKnown RBP9.26□□□□□ -0.93
USP54-203ENST00000418501 TSGA10Q9BZW7 698 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 BLOC1S4Q9NUP1 217 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 PKD2L1Q9P0L9 805 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 SLC9A2Q9UBY0 812 aa9.26□□□□□ -0.93
USP54-203ENST00000418501 POTEFA5A3E0 1075 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 KIAA0391O15091 583 aaKnown RBP9.25□□□□□ -0.93
USP54-203ENST00000418501 POTEIP0CG38 1075 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 GUCY2CP25092 1073 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 NR1I3Q14994 352 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 KNOP1Q1ED39 458 aaKnown RBP9.25□□□□□ -0.93
USP54-203ENST00000418501 POTEGQ6S5H5 508 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 POTEEQ6S8J3 1075 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 KIAA1524Q8TCG1 905 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 FAM81BQ96LP2 452 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 GLIS2Q9BZE0 524 aaPredicted RBP9.25□□□□□ -0.93
USP54-203ENST00000418501 TAF1DQ9H5J8 278 aaPredicted RBP9.25□□□□□ -0.93
USP54-203ENST00000418501 OLFML3Q9NRN5 406 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 WNT7AO00755 349 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 TNNT1P13805 278 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 CYP11B2P19099 503 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 FMR1Q06787 632 aaKnown RBP eCLIP9.25□□□□□ -0.93
USP54-203ENST00000418501 STRN3Q13033 797 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 CTTNQ14247 550 aaKnown RBP9.25□□□□□ -0.93
USP54-203ENST00000418501 CENPPQ6IPU0 288 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 PADI6Q6TGC4 694 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 MMTAG2Q9BU76 263 aaKnown RBP9.25□□□□□ -0.93
USP54-203ENST00000418501 JPH1Q9HDC5 661 aaPredicted RBP9.25□□□□□ -0.93
USP54-203ENST00000418501 NFIBO00712 420 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 HOXC6P09630 235 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 XRCC5P13010 732 aaKnown RBP9.25□□□□□ -0.93
USP54-203ENST00000418501 PSMC2P35998 433 aaKnown RBP9.25□□□□□ -0.93
USP54-203ENST00000418501 SHROOM1Q2M3G4 852 aaPredicted RBP9.25□□□□□ -0.93
USP54-203ENST00000418501 SMYD4Q8IYR2 804 aaPredicted RBP9.25□□□□□ -0.93
USP54-203ENST00000418501 TBC1D5Q92609 795 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 ARFGEF1Q9Y6D6 1849 aa9.25□□□□□ -0.93
USP54-203ENST00000418501 A0A0G2JLL6 359 aaPredicted RBP9.24□□□□□ -0.93
USP54-203ENST00000418501 LRRC10BA6NIK2 292 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 ATP1A3P13637 1013 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 SYCP1Q15431 976 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 CCDC70Q6NSX1 233 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 FRMD5Q7Z6J6 570 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 PRRT2Q7Z6L0 340 aaPredicted RBP9.24□□□□□ -0.93
USP54-203ENST00000418501 KIAA1328Q86T90 577 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 VSIG10LQ86VR7 867 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 SENP7Q9BQF6 1050 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 MKNK1Q9BUB5 465 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 SPATC1LQ9H0A9 340 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 GBP3Q9H0R5 595 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 SNCAIPQ9Y6H5 919 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 BAZ2BQ9UIF8 2168 aaKnown RBP9.24□□□□□ -0.93
USP54-203ENST00000418501 GREB1LQ9C091 1923 aaPredicted RBP9.24□□□□□ -0.93
USP54-203ENST00000418501 SPDYE16A6NNV3 312 aaPredicted RBP9.24□□□□□ -0.93
USP54-203ENST00000418501 ADM5C9JUS6 153 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 MED24O75448 989 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 XKR3Q5GH77 459 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 TCERG1LQ5VWI1 586 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 PRAMEF18Q5VWM3 479 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 LBX2Q6XYB7 198 aa9.24□□□□□ -0.93
USP54-203ENST00000418501 GPRC5AQ8NFJ5 357 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms