RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 MCM4P33991 863 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 TCF7P36402 384 aaPredicted RBP13.82□□□□□ -0.2
LINC00339-201ENST00000404210 TXLNAP40222 546 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 UBE2HP62256 183 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 HYIQ5T013 277 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 SWSAP1Q6NVH7 229 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 USP49Q70CQ1 688 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 PLPPR4Q7Z2D5 763 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 CABP7Q86V35 215 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 CATSPER3Q86XQ3 398 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 AFAP1L1Q8TED9 768 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 SYMPKQ92797 1274 aaKnown RBP13.82□□□□□ -0.2
LINC00339-201ENST00000404210 LENG1Q96BZ8 264 aaPredicted RBP13.82□□□□□ -0.2
LINC00339-201ENST00000404210 DYDC2Q96IM9 177 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 MCOLN1Q9GZU1 580 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 RNF208Q9H0X6 261 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 CCDC39Q9UFE4 941 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 CEP350Q5VT06 3117 aa13.82□□□□□ -0.2
LINC00339-201ENST00000404210 MYH9P35579 1960 aaKnown RBP13.82□□□□□ -0.2
LINC00339-201ENST00000404210 GADD45BO75293 160 aaPredicted RBP13.81□□□□□ -0.2
LINC00339-201ENST00000404210 MED24O75448 989 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 LYPLA2O95372 231 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 PGK1P00558 417 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 C6orf222P0C671 652 aaPredicted RBP13.81□□□□□ -0.2
LINC00339-201ENST00000404210 XRCC6P12956 609 aaKnown RBP eCLIP13.81□□□□□ -0.2
LINC00339-201ENST00000404210 CCT6AP40227 531 aaKnown RBP13.81□□□□□ -0.2
LINC00339-201ENST00000404210 QARSP47897 775 aaKnown RBP13.81□□□□□ -0.2
LINC00339-201ENST00000404210 STAT5BP51692 787 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 PSMC5P62195 406 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 FSCN1Q16658 493 aaKnown RBP13.81□□□□□ -0.2
LINC00339-201ENST00000404210 GNASQ5JWF2 1037 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 FAM160B1Q5W0V3 765 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 RNF180Q86T96 592 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 C4orf19Q8IY42 314 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 PCSK9Q8NBP7 692 aaKnown RBP13.81□□□□□ -0.2
LINC00339-201ENST00000404210 ARRDC4Q8NCT1 418 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 SNX29Q8TEQ0 813 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 MRPS27Q92552 414 aaKnown RBP13.81□□□□□ -0.2
LINC00339-201ENST00000404210 CALML4Q96GE6 196 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 PCYT2Q99447 389 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 NT5C3AQ9H0P0 336 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 SMARCAD1Q9H4L7 1026 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 AZI2Q9H6S1 392 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 ZSWIM4Q9H7M6 989 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 ZNF302Q9NR11 478 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 RGL1Q9NZL6 768 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 GABBR1Q9UBS5 961 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 HPSEQ9Y251 543 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 MAFBQ9Y5Q3 323 aaPredicted RBP13.81□□□□□ -0.2
LINC00339-201ENST00000404210 EMSYQ7Z589 1322 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 SYNRGQ9UMZ2 1314 aa13.81□□□□□ -0.2
LINC00339-201ENST00000404210 BACH1O14867 736 aa13.8□□□□□ -0.2
LINC00339-201ENST00000404210 LGALS2P05162 132 aa13.8□□□□□ -0.2
LINC00339-201ENST00000404210 SLC26A2P50443 739 aa13.8□□□□□ -0.2
LINC00339-201ENST00000404210 BEX3Q00994 111 aa13.8□□□□□ -0.2
LINC00339-201ENST00000404210 CTTNQ14247 550 aaKnown RBP13.8□□□□□ -0.2
LINC00339-201ENST00000404210 UTP14CQ5TAP6 766 aaKnown RBP13.8□□□□□ -0.2
LINC00339-201ENST00000404210 CCSAPQ6IQ19 270 aaPredicted RBP13.8□□□□□ -0.2
LINC00339-201ENST00000404210 CCDC60Q8IWA6 550 aaPredicted RBP13.8□□□□□ -0.2
LINC00339-201ENST00000404210 TPH2Q8IWU9 490 aa13.8□□□□□ -0.2
LINC00339-201ENST00000404210 BANK1Q8NDB2 785 aa13.8□□□□□ -0.2
LINC00339-201ENST00000404210 ATP6V0A1Q93050 837 aa13.8□□□□□ -0.2
LINC00339-201ENST00000404210 PNMA5Q96PV4 448 aa13.8□□□□□ -0.2
LINC00339-201ENST00000404210 PYM1Q9BRP8 204 aaKnown RBP13.8□□□□□ -0.2
LINC00339-201ENST00000404210 C16orf70Q9BSU1 422 aa13.8□□□□□ -0.2
LINC00339-201ENST00000404210 TSEN34Q9BSV6 310 aaKnown RBP13.8□□□□□ -0.2
LINC00339-201ENST00000404210 KDM3AQ9Y4C1 1321 aa13.8□□□□□ -0.2
LINC00339-201ENST00000404210 A0A1B0GVL5 298 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 MYADML2A6NDP7 307 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 SGPL1O95470 568 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 GJB1P08034 283 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 ATXN8OSP0DMR3 200 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 ATP4AP20648 1035 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 PTMSP20962 102 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 IRX5P78411 483 aaPredicted RBP13.79□□□□□ -0.2
LINC00339-201ENST00000404210 CYP4A11Q02928 519 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 GRB10Q13322 594 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 KARSQ15046 597 aaKnown RBP13.79□□□□□ -0.2
LINC00339-201ENST00000404210 LRRC41Q15345 812 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 KCNA10Q16322 511 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 ECM1Q16610 540 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 TMEM119Q4V9L6 283 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 PDXDC2PQ6P474 469 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 CCDC73Q6ZRK6 1079 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 FSIP1Q8NA03 581 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 GLG1Q92896 1179 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 CDK5RAP3Q96JB5 506 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 DEFB118Q96PH6 123 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 NACC1Q96RE7 527 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 LXNQ9BS40 222 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 PANK2Q9BZ23 570 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 NRBP2Q9NSY0 501 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 ERAP1Q9NZ08 941 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 OGDHLQ9ULD0 1010 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 KCNH3Q9ULD8 1083 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 KIAA1024Q9UPX6 916 aa13.79□□□□□ -0.2
LINC00339-201ENST00000404210 DDX11L8A8MPP1 907 aa13.78□□□□□ -0.2
LINC00339-201ENST00000404210 H3BRB1 525 aa13.78□□□□□ -0.2
LINC00339-201ENST00000404210 STBD1O95210 358 aa13.78□□□□□ -0.2
LINC00339-201ENST00000404210 MYCP01106 439 aaPredicted RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms