RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 TXNP10599 105 aaKnown RBP13.05□□□□□ -0.32
SKA3-203ENST00000400018 SARSP49591 514 aaKnown RBP13.05□□□□□ -0.32
SKA3-203ENST00000400018 ZNF792Q3KQV3 632 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 MOXD1Q6UVY6 613 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 SV2BQ7L1I2 683 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 CCDC102AQ96A19 550 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 AK8Q96MA6 479 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 RAB34Q9BZG1 259 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 JPH1Q9HDC5 661 aaPredicted RBP13.05□□□□□ -0.32
SKA3-203ENST00000400018 PLXNB2O15031 1838 aa13.05□□□□□ -0.32
SKA3-203ENST00000400018 RBBP6Q7Z6E9 1792 aaKnown RBP13.05□□□□□ -0.32
SKA3-203ENST00000400018 EIF3JO75822 258 aaKnown RBP13.04□□□□□ -0.32
SKA3-203ENST00000400018 KRT18P05783 430 aaKnown RBP13.04□□□□□ -0.32
SKA3-203ENST00000400018 ZNF286BP0CG31 522 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 CYP11B2P19099 503 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 ATP4AP20648 1035 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 RPA1P27694 616 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 PRCPP42785 496 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 PPP2R5CQ13362 524 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 STX1AQ16623 288 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 B3GNT9Q6UX72 402 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 TIGD1Q96MW7 591 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 REEP2Q9BRK0 252 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 SAMSN1Q9NSI8 373 aaKnown RBP13.04□□□□□ -0.32
SKA3-203ENST00000400018 MORF4L1Q9UBU8 362 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 ADGRA2Q96PE1 1338 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 CDH23Q9H251 3354 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 SPATA31C2B4DYI2 1134 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 GJB1P08034 283 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 GCLCP48506 637 aaPredicted RBP13.04□□□□□ -0.32
SKA3-203ENST00000400018 NLRP12P59046 1061 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 CCNA1P78396 465 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 PRKCZQ05513 592 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 IQCB1Q15051 598 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 SPC24Q8NBT2 197 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 TRIM44Q96DX7 344 aaPredicted RBP13.04□□□□□ -0.32
SKA3-203ENST00000400018 MLXIPQ9HAP2 919 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 ZFYVE28Q9HCC9 887 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.04□□□□□ -0.32
SKA3-203ENST00000400018 SLC9A2Q9UBY0 812 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 SLC12A3P55017 1021 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 SETQ01105 290 aaPredicted RBP13.04□□□□□ -0.32
SKA3-203ENST00000400018 MORC3Q14149 939 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 ANO5Q75V66 913 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 GPIHBP1Q8IV16 184 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 KIAA0895Q8NCT3 520 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 CD99L2Q8TCZ2 262 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 PCYT2Q99447 389 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 RNF186Q9NXI6 227 aa13.04□□□□□ -0.32
SKA3-203ENST00000400018 GTPBP6O43824 516 aaPredicted RBP13.03□□□□□ -0.32
SKA3-203ENST00000400018 FARP2O94887 1054 aaPredicted RBP13.03□□□□□ -0.32
SKA3-203ENST00000400018 EDNRBP24530 442 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 IGBP1P78318 339 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 BEX3Q00994 111 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 GRB14Q14449 540 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 ZC2HC1CQ53FD0 456 aaPredicted RBP13.03□□□□□ -0.32
SKA3-203ENST00000400018 SMAP1Q8IYB5 467 aaPredicted RBP13.03□□□□□ -0.32
SKA3-203ENST00000400018 DNERQ8NFT8 737 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 DNAJC19Q96DA6 116 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 FANCLQ9NW38 375 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 ADD3Q9UEY8 706 aaKnown RBP13.03□□□□□ -0.32
SKA3-203ENST00000400018 DDX41Q9UJV9 622 aaKnown RBP13.03□□□□□ -0.32
SKA3-203ENST00000400018 DNM3Q9UQ16 869 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 GSTTP1A0A1W2PQM5 241 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 TISP43B9A030 160 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 TBX3O15119 743 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 TCF7P36402 384 aaPredicted RBP13.03□□□□□ -0.32
SKA3-203ENST00000400018 MRE11P49959 708 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 DRP2Q13474 957 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 CCDC144BQ3MJ40 725 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 MTERF2Q49AM1 385 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 TAPT1Q6NXT6 567 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 HSD3B7Q9H2F3 369 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 CREBZFQ9NS37 354 aa13.03□□□□□ -0.32
SKA3-203ENST00000400018 PPP1R3GB7ZBB8 358 aa13.02□□□□□ -0.32
SKA3-203ENST00000400018 CTAGE5O15320 804 aa13.02□□□□□ -0.32
SKA3-203ENST00000400018 NMT1P30419 496 aaKnown RBP13.02□□□□□ -0.32
SKA3-203ENST00000400018 TM4SF4P48230 202 aa13.02□□□□□ -0.32
SKA3-203ENST00000400018 FLT3LGP49771 235 aa13.02□□□□□ -0.32
SKA3-203ENST00000400018 RINT1Q6NUQ1 792 aa13.02□□□□□ -0.32
SKA3-203ENST00000400018 MAMDC4Q6UXC1 1216 aa13.02□□□□□ -0.32
SKA3-203ENST00000400018 SPATA33Q96N06 139 aa13.02□□□□□ -0.32
SKA3-203ENST00000400018 SEPT9Q9UHD8 586 aaPredicted RBP13.02□□□□□ -0.32
SKA3-203ENST00000400018 PLXNA1Q9UIW2 1896 aa13.02□□□□□ -0.33
SKA3-203ENST00000400018 CA12O43570 354 aa13.02□□□□□ -0.33
SKA3-203ENST00000400018 CSDE1O75534 798 aaKnown RBP13.02□□□□□ -0.33
SKA3-203ENST00000400018 SMPD1P17405 629 aa13.02□□□□□ -0.33
SKA3-203ENST00000400018 CNGA1P29973 690 aa13.02□□□□□ -0.33
SKA3-203ENST00000400018 YWHABP31946 246 aaKnown RBP13.02□□□□□ -0.33
SKA3-203ENST00000400018 NCAPHQ15003 741 aa13.02□□□□□ -0.33
SKA3-203ENST00000400018 GNPTABQ3T906 1256 aa13.02□□□□□ -0.33
SKA3-203ENST00000400018 XKR9Q5GH70 373 aa13.02□□□□□ -0.33
SKA3-203ENST00000400018 HERC4Q5GLZ8 1057 aaPredicted RBP13.02□□□□□ -0.33
SKA3-203ENST00000400018 SFR1Q86XK3 245 aa13.02□□□□□ -0.33
SKA3-203ENST00000400018 FAM200AQ8TCP9 573 aa13.02□□□□□ -0.33
SKA3-203ENST00000400018 AFG1LQ8WV93 481 aa13.02□□□□□ -0.33
SKA3-203ENST00000400018 TINF2Q9BSI4 451 aa13.02□□□□□ -0.33
SKA3-203ENST00000400018 ANO10Q9NW15 660 aa13.02□□□□□ -0.33
SKA3-203ENST00000400018 SYNGAP1Q96PV0 1343 aa13.02□□□□□ -0.33
SKA3-203ENST00000400018 BECN2A8MW95 431 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms