RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 CASP1P29466 404 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 SLC16A2P36021 539 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 MDH1P40925 334 aaKnown RBP12.25□□□□□ -0.45
CUX1-204ENST00000393824 PAK1Q13153 545 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 RNF187Q5TA31 235 aaPredicted RBP12.25□□□□□ -0.45
CUX1-204ENST00000393824 TLDC1Q6P9B6 456 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 PARP9Q8IXQ6 854 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 FUKQ8N0W3 1084 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 SH2D3CQ8N5H7 860 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 TRIM58Q8NG06 486 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 ZNF507Q8TCN5 953 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 DCPSQ96C86 337 aaKnown RBP12.25□□□□□ -0.45
CUX1-204ENST00000393824 EPSTI1Q96J88 318 aa12.25□□□□□ -0.45
CUX1-204ENST00000393824 A0A1B0GUA9 196 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 GTPBP6O43824 516 aaPredicted RBP12.24□□□□□ -0.45
CUX1-204ENST00000393824 KRT14P02533 472 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 KRT2P35908 639 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 GUCY1A3Q02108 690 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 IFT88Q13099 833 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 GLE1Q53GS7 698 aaKnown RBP12.24□□□□□ -0.45
CUX1-204ENST00000393824 PPP4R3AQ6IN85 833 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 CYB5D1Q6P9G0 228 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 TAX1BP1Q86VP1 789 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 FAM228AQ86W67 206 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 SULF1Q8IWU6 871 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 MREGQ8N565 214 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 SYMPKQ92797 1274 aaKnown RBP12.24□□□□□ -0.45
CUX1-204ENST00000393824 KLRG1Q96E93 195 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 PHF20Q9BVI0 1012 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 TSGA10Q9BZW7 698 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 GPCPD1Q9NPB8 672 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 PITPNM2Q9BZ72 1349 aa12.24□□□□□ -0.45
CUX1-204ENST00000393824 ZNF233A6NK53 670 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 LGALS16A8MUM7 142 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 KLRF2D3W0D1 207 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 F5H6K3 240 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 USP2O75604 605 aaPredicted RBP12.23□□□□□ -0.45
CUX1-204ENST00000393824 IPO7O95373 1038 aaKnown RBP12.23□□□□□ -0.45
CUX1-204ENST00000393824 NDUFB10O96000 172 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 EZRP15311 586 aaKnown RBP12.23□□□□□ -0.45
CUX1-204ENST00000393824 NR1D1P20393 614 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 IRX1P78414 480 aaPredicted RBP12.23□□□□□ -0.45
CUX1-204ENST00000393824 KLRC3Q07444 240 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 RRAGBQ5VZM2 374 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 HAUS3Q68CZ6 603 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 KCTD16Q68DU8 428 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 TYW1BQ6NUM6 668 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 OXER1Q8TDS5 423 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 MKL1Q969V6 931 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 TRIM6Q9C030 488 aaPredicted RBP12.23□□□□□ -0.45
CUX1-204ENST00000393824 ATP6V0A4Q9HBG4 840 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 NYAP2Q9P242 653 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 MYH4Q9Y623 1939 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 TTC36A6NLP5 189 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 PRPF3O43395 683 aaKnown RBP12.23□□□□□ -0.45
CUX1-204ENST00000393824 TAL1P17542 331 aaPredicted RBP12.23□□□□□ -0.45
CUX1-204ENST00000393824 TCP1P17987 556 aaKnown RBP12.23□□□□□ -0.45
CUX1-204ENST00000393824 PAX7P23759 505 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 SLC8A1P32418 973 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 TRAPPC10P48553 1259 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 VAV2P52735 878 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 CDK17Q00537 523 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 KIF5AQ12840 1032 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 ZNF658Q5TYW1 1059 aaPredicted RBP12.23□□□□□ -0.45
CUX1-204ENST00000393824 IRF2BP1Q8IU81 584 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 CCDC114Q96M63 670 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 HINFPQ9BQA5 517 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 WDR90Q96KV7 1748 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 CEP350Q5VT06 3117 aa12.23□□□□□ -0.45
CUX1-204ENST00000393824 IQCA1LA6NCM1 817 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 HMGB1P1B2RPK0 211 aaPredicted RBP12.22□□□□□ -0.45
CUX1-204ENST00000393824 NT5C2P49902 561 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 SEC24CP53992 1094 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 ATP2C1P98194 919 aaPredicted RBP12.22□□□□□ -0.45
CUX1-204ENST00000393824 SLC7A5Q01650 507 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 IFFO1Q0D2I5 559 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 CFAP58Q5T655 872 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 RETREG2Q8NC44 543 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 NELFBQ8WX92 580 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 GPKOWQ92917 476 aaPredicted RBP eCLIP12.22□□□□□ -0.457e-6■□□□□ 10
CUX1-204ENST00000393824 CDCA5Q96FF9 252 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 TTYH3Q9C0H2 523 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 NHEJ1Q9H9Q4 299 aaPredicted RBP12.22□□□□□ -0.45
CUX1-204ENST00000393824 VAT1LQ9HCJ6 419 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 VPS54Q9P1Q0 977 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 ZNF112Q9UJU3 913 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 DUSP10Q9Y6W6 482 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 NEBLO76041 1014 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 PARP1P09874 1014 aaKnown RBP12.22□□□□□ -0.45
CUX1-204ENST00000393824 CALM1P0DP23 149 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 CALM2P0DP24 149 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 CALM3P0DP25 149 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 SLC8A3P57103 927 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 SNAP25P60880 206 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 ZNF543Q08ER8 600 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 ITGB3BPQ13352 177 aaPredicted RBP12.22□□□□□ -0.45
CUX1-204ENST00000393824 CCDC121Q6ZUS5 278 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 CEP57Q86XR8 500 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 MAB21L3Q8N8X9 362 aa12.22□□□□□ -0.45
CUX1-204ENST00000393824 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.22□□□□□ -0.456e-12■■■■■ 38.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms