RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RNF10Q8N5U6 811 aaKnown RBP13.3□□□□□ -0.28
CLIP3-201ENST00000360535 ARMCX3Q9UH62 379 aaPredicted RBP13.3□□□□□ -0.28
CLIP3-201ENST00000360535 HOXA13P31271 388 aaPredicted RBP13.3□□□□□ -0.28
CLIP3-201ENST00000360535 GTF2A1P52655 376 aaPredicted RBP13.3□□□□□ -0.28
CLIP3-201ENST00000360535 SEMA3FQ13275 785 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 TRIM59Q8IWR1 403 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 EFCAB13Q8IY85 973 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 RDH13Q8NBN7 331 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 U2AF1L4Q8WU68 220 aaKnown RBP13.3□□□□□ -0.28
CLIP3-201ENST00000360535 ZNF219Q9P2Y4 722 aaPredicted RBP13.3□□□□□ -0.28
CLIP3-201ENST00000360535 GRIN2DO15399 1336 aa13.3□□□□□ -0.28
CLIP3-201ENST00000360535 ESYT2A0FGR8 921 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 GOLGA6L10A6NI86 522 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 E7EVH7 732 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 KIAA0754O94854 1291 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 GCNT3O95395 438 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 COPB2P35606 906 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 EXOC3L4Q17RC7 722 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 QRICH1Q2TAL8 776 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 ALKBH5Q6P6C2 394 aaKnown RBP13.29□□□□□ -0.28
CLIP3-201ENST00000360535 PROM2Q8N271 834 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 CAPN7Q9Y6W3 813 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.29□□□□□ -0.28
CLIP3-201ENST00000360535 GFPT2O94808 682 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 NR1D1P20393 614 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 TNNC1P63316 161 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 ZCWPW2Q504Y3 356 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 ZFPM1Q8IX07 1006 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 DHX37Q8IY37 1157 aaKnown RBP13.29□□□□□ -0.28
CLIP3-201ENST00000360535 PIGOQ8TEQ8 1089 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 NT5C3AQ9H0P0 336 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 AMACRQ9UHK6 382 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 PCDHAC2Q9Y5I4 1007 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 A0A087WUV0 522 aaPredicted RBP13.29□□□□□ -0.28
CLIP3-201ENST00000360535 ZBTB5O15062 677 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 ITGA4P13612 1032 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 ZNF76P36508 570 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 UBXN2AP68543 259 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 NFIAQ12857 509 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 MEI1Q5TIA1 1274 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 DAAM2Q86T65 1068 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 SLF2Q8IX21 1173 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 OTUD6BQ8N6M0 293 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 TBC1D16Q8TBP0 767 aa13.29□□□□□ -0.28
CLIP3-201ENST00000360535 CELF4Q9BZC1 486 aaKnown RBP13.29□□□□□ -0.28
CLIP3-201ENST00000360535 LAMB2P55268 1798 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 SMIM23A6NLE4 172 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 KRIT1O00522 736 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 SHOX2O60902 331 aaPredicted RBP13.28□□□□□ -0.28
CLIP3-201ENST00000360535 XRCC5P13010 732 aaKnown RBP13.28□□□□□ -0.28
CLIP3-201ENST00000360535 IRX3P78415 501 aaPredicted RBP13.28□□□□□ -0.28
CLIP3-201ENST00000360535 LLGL1Q15334 1064 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 ARSHQ5FYA8 562 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 PEX26Q7Z412 305 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 CYP2W1Q8TAV3 490 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 ANO3Q9BYT9 981 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 BHMT2Q9H2M3 363 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 RGL1Q9NZL6 768 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 TSKSQ9UJT2 592 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 MYH4Q9Y623 1939 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 UCHL3P15374 230 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 ATP2B4P23634 1241 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 ERVK-9P63128 1117 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 CATSPER3Q86XQ3 398 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 USP38Q8NB14 1042 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 SH3GL2Q99962 352 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 REEP2Q9BRK0 252 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 GOPCQ9HD26 462 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 COL22A1Q8NFW1 1626 aaPredicted RBP13.28□□□□□ -0.28
CLIP3-201ENST00000360535 TMOD1P28289 359 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 LSP1P33241 339 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 CTNNA1P35221 906 aaKnown RBP13.28□□□□□ -0.28
CLIP3-201ENST00000360535 PPP4R3AQ6IN85 833 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 MAEAQ7L5Y9 396 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 SPICE1Q8N0Z3 855 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 KAT2BQ92831 832 aa13.28□□□□□ -0.28
CLIP3-201ENST00000360535 DHX36Q9H2U1 1008 aaKnown RBP13.28□□□□□ -0.28
CLIP3-201ENST00000360535 AJAP1Q9UKB5 411 aaPredicted RBP13.28□□□□□ -0.28
CLIP3-201ENST00000360535 MYH7BA7E2Y1 1941 aa13.27□□□□□ -0.28
CLIP3-201ENST00000360535 DAPK3O43293 454 aa13.27□□□□□ -0.28
CLIP3-201ENST00000360535 GDF11O95390 407 aa13.27□□□□□ -0.28
CLIP3-201ENST00000360535 SERPINB2P05120 415 aa13.27□□□□□ -0.28
CLIP3-201ENST00000360535 FLT3P36888 993 aa13.27□□□□□ -0.28
CLIP3-201ENST00000360535 MNAT1P51948 309 aa13.27□□□□□ -0.28
CLIP3-201ENST00000360535 CDC37Q16543 378 aaPredicted RBP13.27□□□□□ -0.28
CLIP3-201ENST00000360535 COBLL1Q53SF7 1204 aa13.27□□□□□ -0.28
CLIP3-201ENST00000360535 GBP6Q6ZN66 633 aa13.27□□□□□ -0.28
CLIP3-201ENST00000360535 CAVIN3Q969G5 261 aa13.27□□□□□ -0.28
CLIP3-201ENST00000360535 NUCKS1Q9H1E3 243 aaKnown RBP13.27□□□□□ -0.28
CLIP3-201ENST00000360535 KCTD10Q9H3F6 313 aa13.27□□□□□ -0.28
CLIP3-201ENST00000360535 GDF3Q9NR23 364 aa13.27□□□□□ -0.28
CLIP3-201ENST00000360535 DNM3Q9UQ16 869 aa13.27□□□□□ -0.28
CLIP3-201ENST00000360535 NAV1Q8NEY1 1877 aa13.27□□□□□ -0.28
CLIP3-201ENST00000360535 MYO1FO00160 1098 aa13.27□□□□□ -0.29
CLIP3-201ENST00000360535 ZBTB39O15060 712 aa13.27□□□□□ -0.29
CLIP3-201ENST00000360535 AKAP3O75969 853 aa13.27□□□□□ -0.29
CLIP3-201ENST00000360535 KIF4AO95239 1232 aa13.27□□□□□ -0.29
CLIP3-201ENST00000360535 AFPP02771 609 aaKnown RBP13.27□□□□□ -0.29
CLIP3-201ENST00000360535 ITIH3Q06033 890 aa13.27□□□□□ -0.29
CLIP3-201ENST00000360535 IFT88Q13099 833 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms