RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 A0A1B0GVL5 298 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 ATP8B1O43520 1251 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 CELF2O95319 508 aaKnown RBP11.17□□□□□ -0.62
SYNE1-203ENST00000354674 MYBL2P10244 700 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 PFKFB1P16118 471 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 GBP2P32456 591 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-203ENST00000354674 CIITAP33076 1130 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 MCF2L2Q86YR7 1114 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 CEP57L1Q8IYX8 460 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 CPLX3Q8WVH0 158 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 CSRNP2Q9H175 543 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 KINO60870 393 aaKnown RBP11.17□□□□□ -0.62
SYNE1-203ENST00000354674 CPP00450 1065 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 CDC25BP30305 580 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 SNAPC2Q13487 334 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 TKFCQ3LXA3 575 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 LONRF3Q496Y0 759 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 CCDC73Q6ZRK6 1079 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 OTUD6BQ8N6M0 293 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 MB21D1Q8N884 522 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 ZNF483Q8TF39 744 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-203ENST00000354674 MS4A4AQ96JQ5 239 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 ZNF408Q9H9D4 720 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 PPP2R2CQ9Y2T4 447 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 FRMPD4Q14CM0 1322 aa11.17□□□□□ -0.62
SYNE1-203ENST00000354674 CCDC151A5D8V7 595 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 HOXA13P31271 388 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-203ENST00000354674 ARHGAP4P98171 946 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 THEMIS2Q5TEJ8 643 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 GADL1Q6ZQY3 521 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 RABGGTAQ92696 567 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 FANCLQ9NW38 375 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 RPTORQ8N122 1335 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 PASKQ96RG2 1323 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 SPDYE3A6NKU9 549 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 NFIBO00712 420 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 SLC37A4O43826 429 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 TDP2O95551 362 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 OR52Z1P0C646 297 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 LONP1P36776 959 aaKnown RBP11.16□□□□□ -0.62
SYNE1-203ENST00000354674 ATP1A2P50993 1020 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 ELOA2Q8IYF1 753 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-203ENST00000354674 MCM8Q9UJA3 840 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 SLC45A1Q9Y2W3 748 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 RIPK3Q9Y572 518 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 MRFAP1Q9Y605 127 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 PHLPP2Q6ZVD8 1323 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 CFBP00751 764 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 PYGLP06737 847 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 Q4G0T1 1027 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 ZC3H12AQ5D1E8 599 aaKnown RBP11.16□□□□□ -0.62
SYNE1-203ENST00000354674 RSRC2Q7L4I2 434 aaKnown RBP11.16□□□□□ -0.62
SYNE1-203ENST00000354674 CPXCR1Q8N123 301 aa11.16□□□□□ -0.62
SYNE1-203ENST00000354674 NAT10Q9H0A0 1025 aaKnown RBP11.16□□□□□ -0.62
SYNE1-203ENST00000354674 ASCC2Q9H1I8 757 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-203ENST00000354674 ZBTB48P10074 688 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-203ENST00000354674 ALAS1P13196 640 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 POTEDQ86YR6 584 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 TEX13BQ9BXU2 312 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 KCNH3Q9ULD8 1083 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 L1RE1Q9UN81 338 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 CNMDO75829 334 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 KIAA0754O94854 1291 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 ECEL1O95672 775 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 GNGT1P63211 74 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 CEP85LQ5SZL2 805 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 SNRNP48Q6IEG0 339 aaKnown RBP11.15□□□□□ -0.62
SYNE1-203ENST00000354674 DTHD1Q6ZMT9 781 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 USP49Q70CQ1 688 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 LENG9Q96B70 501 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 KCNMB3Q9NPA1 279 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 COL20A1Q9P218 1284 aa11.15□□□□□ -0.62
SYNE1-203ENST00000354674 CTDP1Q9Y5B0 961 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-203ENST00000354674 KLHL33A6NCF5 533 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 FXR2P51116 673 aaKnown RBP eCLIP11.14□□□□□ -0.63
SYNE1-203ENST00000354674 GTF2A2P52657 109 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 PABPC4Q13310 644 aaKnown RBP eCLIP11.14□□□□□ -0.63
SYNE1-203ENST00000354674 KCNB1Q14721 858 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 CCDC181Q5TID7 509 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 SPRYD7Q5W111 196 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 SARM1Q6SZW1 724 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 NOA1Q8NC60 698 aaKnown RBP11.14□□□□□ -0.63
SYNE1-203ENST00000354674 SPDYE1Q8NFV5 336 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-203ENST00000354674 HAS1Q92839 578 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 YIPF3Q9GZM5 350 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 TMEM165Q9HC07 324 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 BTBD7Q9P203 1132 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 DDX25Q9UHL0 483 aaKnown RBP11.14□□□□□ -0.63
SYNE1-203ENST00000354674 RABGAP1Q9Y3P9 1069 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 CTAGE5O15320 804 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 CETPP11597 493 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 GGCXP38435 758 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 STAT3P40763 770 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 SYKP43405 635 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 CALCRLQ16602 461 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 SPECC1Q5M775 1068 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 RIOX2Q8IUF8 465 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 FMNL3Q8IVF7 1028 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 CCDC150Q8NCX0 1101 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 SYTL5Q8TDW5 730 aaPredicted RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms