RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 USP26Q9BXU7 913 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 RC3H2Q9HBD1 1191 aaKnown RBP12.96□□□□□ -0.33
RTN3-204ENST00000354497 PCDHGC5Q9Y5F6 944 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 C5orf42Q9H799 3197 aa12.96□□□□□ -0.33
RTN3-204ENST00000354497 PDGFBP01127 241 aaPredicted RBP12.96□□□□□ -0.34
RTN3-204ENST00000354497 CHRNA1P02708 482 aa12.96□□□□□ -0.34
RTN3-204ENST00000354497 HSP90AA1P07900 732 aaKnown RBP12.96□□□□□ -0.34
RTN3-204ENST00000354497 TGFB3P10600 412 aa12.96□□□□□ -0.34
RTN3-204ENST00000354497 CBX2Q14781 532 aaPredicted RBP12.96□□□□□ -0.34
RTN3-204ENST00000354497 RUFY4Q6ZNE9 571 aa12.96□□□□□ -0.34
RTN3-204ENST00000354497 ASCL5Q7RTU5 278 aa12.96□□□□□ -0.34
RTN3-204ENST00000354497 IQCA1Q86XH1 822 aa12.96□□□□□ -0.34
RTN3-204ENST00000354497 SPPL3Q8TCT6 385 aa12.96□□□□□ -0.34
RTN3-204ENST00000354497 P2RX5Q93086 422 aa12.96□□□□□ -0.34
RTN3-204ENST00000354497 EVI5LQ96CN4 794 aa12.96□□□□□ -0.34
RTN3-204ENST00000354497 ZNF689Q96CS4 500 aaPredicted RBP12.96□□□□□ -0.34
RTN3-204ENST00000354497 ASIC4Q96FT7 647 aa12.96□□□□□ -0.34
RTN3-204ENST00000354497 TLE6Q9H808 572 aa12.96□□□□□ -0.34
RTN3-204ENST00000354497 PRDM4Q9UKN5 801 aa12.96□□□□□ -0.34
RTN3-204ENST00000354497 OPLAHO14841 1288 aa12.95□□□□□ -0.34
RTN3-204ENST00000354497 PER2O15055 1255 aa12.95□□□□□ -0.34
RTN3-204ENST00000354497 DGKIO75912 1065 aa12.95□□□□□ -0.34
RTN3-204ENST00000354497 GLP2RO95838 553 aa12.95□□□□□ -0.34
RTN3-204ENST00000354497 PCP11498 1178 aaKnown RBP12.95□□□□□ -0.34
RTN3-204ENST00000354497 NMIQ13287 307 aaPredicted RBP12.95□□□□□ -0.34
RTN3-204ENST00000354497 PTPN21Q16825 1174 aa12.95□□□□□ -0.34
RTN3-204ENST00000354497 GNPTABQ3T906 1256 aa12.95□□□□□ -0.34
RTN3-204ENST00000354497 CCDC178Q5BJE1 867 aa12.95□□□□□ -0.34
RTN3-204ENST00000354497 SPOUT1Q5T280 376 aaKnown RBP12.95□□□□□ -0.34
RTN3-204ENST00000354497 STOX1Q6ZVD7 989 aa12.95□□□□□ -0.34
RTN3-204ENST00000354497 RSPH3Q86UC2 560 aa12.95□□□□□ -0.34
RTN3-204ENST00000354497 ZNF589Q86UQ0 364 aaPredicted RBP12.95□□□□□ -0.34
RTN3-204ENST00000354497 HOMER1Q86YM7 354 aa12.95□□□□□ -0.34
RTN3-204ENST00000354497 GPR20Q99678 358 aa12.95□□□□□ -0.34
RTN3-204ENST00000354497 BRPF3Q9ULD4 1205 aa12.95□□□□□ -0.34
RTN3-204ENST00000354497 PCDHA1Q9Y5I3 950 aa12.95□□□□□ -0.34
RTN3-204ENST00000354497 GCOM1H8Y6P7 765 aaPredicted RBP12.94□□□□□ -0.34
RTN3-204ENST00000354497 ZNF213O14771 459 aa12.94□□□□□ -0.34
RTN3-204ENST00000354497 POLR2MP0CAP2 368 aa12.94□□□□□ -0.34
RTN3-204ENST00000354497 CD52P31358 61 aa12.94□□□□□ -0.34
RTN3-204ENST00000354497 ICAM3P32942 547 aa12.94□□□□□ -0.34
RTN3-204ENST00000354497 TIE1P35590 1138 aa12.94□□□□□ -0.34
RTN3-204ENST00000354497 NEDD9Q14511 834 aa12.94□□□□□ -0.34
RTN3-204ENST00000354497 NAALADL2Q58DX5 795 aa12.94□□□□□ -0.34
RTN3-204ENST00000354497 CMTR2Q8IYT2 770 aaKnown RBP12.94□□□□□ -0.34
RTN3-204ENST00000354497 ZSCAN10Q96SZ4 725 aaPredicted RBP12.94□□□□□ -0.34
RTN3-204ENST00000354497 APOL5Q9BWW9 433 aa12.94□□□□□ -0.34
RTN3-204ENST00000354497 RTEL1Q9NZ71 1219 aa12.94□□□□□ -0.34
RTN3-204ENST00000354497 RCAN3Q9UKA8 241 aa12.94□□□□□ -0.34
RTN3-204ENST00000354497 TELO2Q9Y4R8 837 aa12.94□□□□□ -0.34
RTN3-204ENST00000354497 ZMYM6O95789 1325 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 B4E1Z4 1266 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 PPP1R11O60927 126 aaPredicted RBP12.93□□□□□ -0.34
RTN3-204ENST00000354497 GATMP50440 423 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 MGAT3Q09327 533 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 PPFIA1Q13136 1202 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 FBXO47Q5MNV8 452 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 TAF2Q6P1X5 1199 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 METTL7BQ6UX53 244 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 TSHZ1Q6ZSZ6 1077 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 DNAJB3Q8WWF6 145 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 NEK1Q96PY6 1258 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 PDCL3Q9H2J4 239 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 EHMT1Q9H9B1 1298 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 BMP2KQ9NSY1 1161 aaPredicted RBP12.93□□□□□ -0.34
RTN3-204ENST00000354497 LRFN2Q9ULH4 789 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 CDY2AQ9Y6F7 541 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 MYO7AQ13402 2215 aa12.93□□□□□ -0.34
RTN3-204ENST00000354497 NRCAMQ92823 1304 aa12.92□□□□□ -0.34
RTN3-204ENST00000354497 TRIOO75962 3097 aa12.92□□□□□ -0.34
RTN3-204ENST00000354497 PRR23AA6NEV1 266 aa12.92□□□□□ -0.34
RTN3-204ENST00000354497 ZBTB5O15062 677 aa12.92□□□□□ -0.34
RTN3-204ENST00000354497 STAG3L1P0CL83 205 aa12.92□□□□□ -0.34
RTN3-204ENST00000354497 SRGAP2BP0DMP2 458 aa12.92□□□□□ -0.34
RTN3-204ENST00000354497 MARK3P27448 753 aa12.92□□□□□ -0.34
RTN3-204ENST00000354497 IGBP1P78318 339 aa12.92□□□□□ -0.34
RTN3-204ENST00000354497 ASTLQ6HA08 431 aaPredicted RBP12.92□□□□□ -0.34
RTN3-204ENST00000354497 LLGL2Q6P1M3 1020 aa12.92□□□□□ -0.34
RTN3-204ENST00000354497 NPAS4Q8IUM7 802 aa12.92□□□□□ -0.34
RTN3-204ENST00000354497 STAG2Q8N3U4 1231 aa12.92□□□□□ -0.34
RTN3-204ENST00000354497 ENAHQ8N8S7 591 aaPredicted RBP12.92□□□□□ -0.34
RTN3-204ENST00000354497 LINC01599Q8WXQ3 324 aa12.92□□□□□ -0.34
RTN3-204ENST00000354497 RIPOR3Q96MK2 946 aa12.92□□□□□ -0.34
RTN3-204ENST00000354497 FAM49AQ9H0Q0 323 aaPredicted RBP12.92□□□□□ -0.34
RTN3-204ENST00000354497 MAP3K20Q9NYL2 800 aaKnown RBP12.92□□□□□ -0.34
RTN3-204ENST00000354497 KLRF2D3W0D1 207 aa12.91□□□□□ -0.34
RTN3-204ENST00000354497 ATMINO43313 823 aaPredicted RBP12.91□□□□□ -0.34
RTN3-204ENST00000354497 FIBPO43427 364 aa12.91□□□□□ -0.34
RTN3-204ENST00000354497 ATF7P17544 494 aaPredicted RBP12.91□□□□□ -0.34
RTN3-204ENST00000354497 TECP42680 631 aa12.91□□□□□ -0.34
RTN3-204ENST00000354497 ID4P47928 161 aa12.91□□□□□ -0.34
RTN3-204ENST00000354497 ADAM17P78536 824 aa12.91□□□□□ -0.34
RTN3-204ENST00000354497 MRPS6P82932 125 aaKnown RBP12.91□□□□□ -0.34
RTN3-204ENST00000354497 GHRHRQ02643 423 aa12.91□□□□□ -0.34
RTN3-204ENST00000354497 VN1R2Q8NFZ6 395 aa12.91□□□□□ -0.34
RTN3-204ENST00000354497 RNF25Q96BH1 459 aaPredicted RBP12.91□□□□□ -0.34
RTN3-204ENST00000354497 UBAC1Q9BSL1 405 aa12.91□□□□□ -0.34
RTN3-204ENST00000354497 AGO3Q9H9G7 860 aaKnown RBP12.91□□□□□ -0.34
RTN3-204ENST00000354497 TUBE1Q9UJT0 475 aa12.91□□□□□ -0.34
RTN3-204ENST00000354497 ZFHX2Q9C0A1 2572 aaPredicted RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms