RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 MAP7D3Q8IWC1 876 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 PIK3R5Q8WYR1 880 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SNX19Q92543 992 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 EFHD2Q96C19 240 aaPredicted RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 C8orf4Q9NR00 106 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 TBC1D7Q9P0N9 293 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ZMYND8Q9ULU4 1186 aaPredicted RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SLC12A7Q9Y666 1083 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 LRP5O75197 1615 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 EFCAB8A8MWE9 144 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SLC1A4P43007 532 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 CPT1AP50416 773 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 IRX5P78411 483 aaPredicted RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 RASGRF1Q13972 1273 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 DOK7Q18PE1 504 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ARHGAP15Q53QZ3 475 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 CTAGE3PQ8IX95 158 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 FAM71BQ8TC56 605 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 CALML6Q8TD86 181 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 IL17RAQ96F46 866 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 TMEM87BQ96K49 555 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 TRIM31Q9BZY9 425 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 PDRG1Q9NUG6 133 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 RWDD3Q9Y3V2 267 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 NR2E1Q9Y466 385 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SMIM23A6NLE4 172 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 GOLGA8KD6RF30 607 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SCG2P13521 617 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF18P17022 549 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ARL4DP49703 201 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ATAD3BQ5T9A4 648 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ARMCX5Q6P1M9 558 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 EMBQ6PCB8 327 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 PALM2Q8IXS6 379 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 DDX17Q92841 729 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 THG1LQ9NWX6 298 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 EHD2Q9NZN4 543 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 RGPD2P0DJD1 1756 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 KANSL1LA0AUZ9 987 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 DCTN3O75935 186 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 URI1O94763 535 aaPredicted RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 RFC1P35251 1148 aaPredicted RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 C11orf88Q6PI97 169 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SAMD3Q8N6K7 520 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ARHGEF2Q92974 986 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 OSBP2Q969R2 916 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 FRMD4BQ9Y2L6 1034 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ICE1Q9Y2F5 2266 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 PATL2C9JE40 543 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SUN1O94901 812 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 HSPA13P48723 471 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 MXRA7P84157 204 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SP3Q02447 781 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF790Q6PG37 636 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 NEK10Q6ZWH5 1172 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SND1Q7KZF4 910 aaKnown RBP eCLIP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 THEM5Q8N1Q8 247 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 PHC3Q8NDX5 983 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 SHCBP1Q8NEM2 672 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 MYRIPQ8NFW9 859 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 DHX38Q92620 1227 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 PPP1R36Q96LQ0 422 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 APOL6Q9BWW8 343 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 UBA5Q9GZZ9 404 aa3.55□□□□□ -1.84
CSMD3-202ENST00000339701 MRPS17Q9Y2R5 130 aaKnown RBP3.55□□□□□ -1.84
CSMD3-202ENST00000339701 CCDC188H7C350 402 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 RNMTO43148 476 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 SRGAP2CP0DJJ0 459 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 TFAP4Q01664 338 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 CYP4A11Q02928 519 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 CUL1Q13616 776 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 CERKLQ49MI3 558 aaPredicted RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 SOCS4Q8WXH5 440 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 AK8Q96MA6 479 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 WRNIP1Q96S55 665 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 SRPK1Q96SB4 655 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 BCL2L12Q9HB09 334 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 NCDNQ9UBB6 729 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 DNAI1Q9UI46 699 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 FIBPO43427 364 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 FKBP1BP68106 108 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 BYSLQ13895 437 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 CCDC144BQ3MJ40 725 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 FAM182BQ5T319 152 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 BTBD8Q5XKL5 378 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 COPS6Q7L5N1 327 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 CSGALNACT1Q8TDX6 532 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 MRPS27Q92552 414 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 LRRC46Q96FV0 321 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 MRPL48Q96GC5 212 aaKnown RBP3.54□□□□□ -1.84
CSMD3-202ENST00000339701 SHDQ96IW2 340 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 ANO3Q9BYT9 981 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 GPCPD1Q9NPB8 672 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 N4BP3O15049 544 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 GSTA2P09210 222 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 ACADMP11310 421 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 TUBA4AP68366 448 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 ZNF174Q15697 407 aa3.54□□□□□ -1.84
CSMD3-202ENST00000339701 ZBTB41Q5SVQ8 909 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms