RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 ZBED2Q9BTP6 218 aa8.87□□□□□ -0.99
VPS41-202ENST00000310301 GH2P01242 217 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 SLC8A3P57103 927 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 GABPAQ06546 454 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 GRAMD4Q6IC98 578 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 OTUD6AQ7L8S5 288 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 FAM84BQ96KN1 310 aaPredicted RBP8.86□□□□□ -0.99
VPS41-202ENST00000310301 NUDT12Q9BQG2 462 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 NRBP2Q9NSY0 501 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 TRPC6Q9Y210 931 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 MTMR6Q9Y217 621 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 UBE2Q2LH0YL09 131 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 KIF1CO43896 1103 aaKnown RBP8.86□□□□□ -0.99
VPS41-202ENST00000310301 NR1D1P20393 614 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 ANKRD13CQ8N6S4 541 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 CCHCR1Q8TD31 782 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 ABCB6Q9NP58 842 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 EPS15L1Q9UBC2 864 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 TESPA1A2RU30 521 aaPredicted RBP8.86□□□□□ -0.99
VPS41-202ENST00000310301 ARHGEF35A5YM69 484 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 BRD2P25440 801 aaKnown RBP8.86□□□□□ -0.99
VPS41-202ENST00000310301 NDUFA8P51970 172 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 CALCRLQ16602 461 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 ABI1Q8IZP0 508 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 SDR42E1Q8WUS8 393 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 CCDC138Q96M89 665 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 CNOT10Q9H9A5 744 aaKnown RBP8.86□□□□□ -0.99
VPS41-202ENST00000310301 ATP8A1Q9Y2Q0 1164 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 ZBBXA8MT70 800 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 TFRCP02786 760 aaKnown RBP8.86□□□□□ -0.99
VPS41-202ENST00000310301 POLR2FP61218 127 aaKnown RBP8.86□□□□□ -0.99
VPS41-202ENST00000310301 STRN3Q13033 797 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 SPATA1Q5VX52 437 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 ZNF280CQ8ND82 737 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 FAM193BQ96PV7 902 aaPredicted RBP8.86□□□□□ -0.99
VPS41-202ENST00000310301 UIMC1Q96RL1 719 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 ANKFY1Q9P2R3 1169 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 BAG5Q9UL15 447 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 DNM3Q9UQ16 869 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 TTLL3Q9Y4R7 772 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 SLC4A7Q9Y6M7 1214 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 FSTL1Q12841 308 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 NONOQ15233 471 aaKnown RBP eCLIP8.86□□□□□ -0.99
VPS41-202ENST00000310301 KRT80Q6KB66 452 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 BBOF1Q8ND07 529 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 LPAR1Q92633 364 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 RUNDC3BQ96NL0 473 aa8.86□□□□□ -0.99
VPS41-202ENST00000310301 FMN2Q9NZ56 1722 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 RBL2Q08999 1139 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 DYNC1I2Q13409 638 aaKnown RBP8.85□□□□□ -0.99
VPS41-202ENST00000310301 FAM47AQ5JRC9 791 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 ZC3H18Q86VM9 953 aaKnown RBP8.85□□□□□ -0.99
VPS41-202ENST00000310301 LRRC47Q8N1G4 583 aaKnown RBP8.85□□□□□ -0.99
VPS41-202ENST00000310301 TAB3Q8N5C8 712 aaPredicted RBP8.85□□□□□ -0.99
VPS41-202ENST00000310301 PNMA1Q8ND90 353 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 GDAP1Q8TB36 358 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 ZSCAN10Q96SZ4 725 aaPredicted RBP8.85□□□□□ -0.99
VPS41-202ENST00000310301 SPZ1Q9BXG8 430 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 IRAK4Q9NWZ3 460 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 NOVA2Q9UNW9 492 aaKnown RBP8.85□□□□□ -0.99
VPS41-202ENST00000310301 GINS2Q9Y248 185 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 EEF1B2P24534 225 aaKnown RBP8.85□□□□□ -0.99
VPS41-202ENST00000310301 ASPHQ12797 758 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 PTPN21Q16825 1174 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 CCDC92Q53HC0 331 aaPredicted RBP8.85□□□□□ -0.99
VPS41-202ENST00000310301 ALS2CLQ60I27 953 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 RGMBQ6NW40 437 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 ARHGEF18Q6ZSZ5 1173 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 NUB1Q9Y5A7 615 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 KIF28PB7ZC32 967 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 TADA3O75528 432 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 SLC25A27O95847 323 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 CSF1RP07333 972 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 GSTA1P08263 222 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 PDHA1P08559 390 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 GSTA2P09210 222 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 ATF7P17544 494 aaPredicted RBP8.85□□□□□ -0.99
VPS41-202ENST00000310301 CMA1P23946 247 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 TM4SF1P30408 202 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 CACNB3P54284 484 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 CTDSPL2Q05D32 466 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 ZNF449Q6P9G9 518 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 TRIML2Q8N7C3 387 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 TRIML1Q8N9V2 468 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 PRPF31Q8WWY3 499 aaKnown RBP8.85□□□□□ -0.99
VPS41-202ENST00000310301 MMP19Q99542 508 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 TUBB6Q9BUF5 446 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 PCDHA7Q9UN72 937 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 PCDHB13Q9Y5F0 798 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 KDM6AO15550 1401 aaPredicted RBP8.85□□□□□ -0.99
VPS41-202ENST00000310301 TKFCQ3LXA3 575 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 RDH13Q8NBN7 331 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 GPRC5AQ8NFJ5 357 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 DCAF4Q8WV16 495 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 DYDC2Q96IM9 177 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 NCAPGQ9BPX3 1015 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 SPTLC3Q9NUV7 552 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 ADAM21Q9UKJ8 722 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 ABCC12Q96J65 1359 aa8.85□□□□□ -0.99
VPS41-202ENST00000310301 hCG_1984214I3L0E3 225 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms