RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 RAB34Q9BZG1 259 aa11.14□□□□□ -0.63
COPB1-201ENST00000249923 FAM184BQ9ULE4 1060 aa11.14□□□□□ -0.63
COPB1-201ENST00000249923 BRWD3Q6RI45 1802 aa11.14□□□□□ -0.63
COPB1-201ENST00000249923 SLX4Q8IY92 1834 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 TOM1O60784 492 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 HERC4Q5GLZ8 1057 aaPredicted RBP11.13□□□□□ -0.63
COPB1-201ENST00000249923 GPATCH4Q5T3I0 446 aaKnown RBP11.13□□□□□ -0.63
COPB1-201ENST00000249923 IRF2BP2Q7Z5L9 587 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 SEPT12Q8IYM1 358 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 IQCDQ96DY2 449 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 REEP2Q9BRK0 252 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 EMILIN3Q9NT22 766 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 SWAP70Q9UH65 585 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 HYOU1Q9Y4L1 999 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 GRID2IPA4D2P6 1211 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 MYBP10242 640 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 CCDC70Q6NSX1 233 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 SH3GL2Q99962 352 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 DHX36Q9H2U1 1008 aaKnown RBP11.13□□□□□ -0.63
COPB1-201ENST00000249923 DBNDD1Q9H9R9 158 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 ADAMTS1Q9UHI8 967 aa11.13□□□□□ -0.63
COPB1-201ENST00000249923 USO1O60763 962 aaKnown RBP11.12□□□□□ -0.63
COPB1-201ENST00000249923 MRPL12P52815 198 aaKnown RBP11.12□□□□□ -0.63
COPB1-201ENST00000249923 SETQ01105 290 aaPredicted RBP11.12□□□□□ -0.63
COPB1-201ENST00000249923 PTK2Q05397 1052 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 SEPT2Q15019 361 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 NAB2Q15742 525 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 SLC18A3Q16572 532 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 CCDC40Q4G0X9 1142 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 TDRD12Q587J7 1177 aaKnown RBP11.12□□□□□ -0.63
COPB1-201ENST00000249923 TTMPQ5BVD1 217 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 SND1Q7KZF4 910 aaKnown RBP eCLIP11.12□□□□□ -0.639e-7■■□□□ 14
COPB1-201ENST00000249923 CACNA2D4Q7Z3S7 1137 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 ZNF571Q7Z3V5 609 aaPredicted RBP11.12□□□□□ -0.63
COPB1-201ENST00000249923 SRLQ86TD4 932 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 INPP4AQ96PE3 977 aaPredicted RBP11.12□□□□□ -0.63
COPB1-201ENST00000249923 SIX2Q9NPC8 291 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 VAV3Q9UKW4 847 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 PCDHGC5Q9Y5F6 944 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 ASTN1O14525 1302 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 GRIN2DO15399 1336 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 EML1O00423 815 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 RAD21O60216 631 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 SHOX2O60902 331 aaPredicted RBP11.12□□□□□ -0.63
COPB1-201ENST00000249923 AKAP3O75969 853 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 SERPING1P05155 500 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 GCFC2P16383 781 aaKnown RBP11.12□□□□□ -0.63
COPB1-201ENST00000249923 CASP4P49662 377 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 ARHGAP4P98171 946 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 KCNH2Q12809 1159 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 PABPC4Q13310 644 aaKnown RBP eCLIP11.12□□□□□ -0.631e-9■■□□□ 12.2
COPB1-201ENST00000249923 KIAA1755Q5JYT7 1200 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 PIK3R5Q8WYR1 880 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 SYN2Q92777 582 aaPredicted RBP11.12□□□□□ -0.63
COPB1-201ENST00000249923 MKL1Q969V6 931 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 CEP63Q96MT8 703 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 AIPL1Q9NZN9 384 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 STIM2Q9P246 746 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 NENFQ9UMX5 172 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 ZMYM2Q9UBW7 1377 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 ZBTB39O15060 712 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 KIAA0754O94854 1291 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 GDF11O95390 407 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 CRKP46108 304 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 CARSP49589 748 aaKnown RBP11.12□□□□□ -0.63
COPB1-201ENST00000249923 ADAM9Q13443 819 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 PRR16Q569H4 304 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 MEI1Q5TIA1 1274 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 SFMBT2Q5VUG0 894 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 HHIPL2Q6UWX4 724 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 SFR1Q86XK3 245 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 IFT81Q8WYA0 676 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 ARL8AQ96BM9 186 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 RUSC1Q9BVN2 902 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 EDEM3Q9BZQ6 932 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 SUGT1Q9Y2Z0 365 aa11.12□□□□□ -0.63
COPB1-201ENST00000249923 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.12□□□□□ -0.63
COPB1-201ENST00000249923 ECM2O94769 699 aaPredicted RBP11.11□□□□□ -0.63
COPB1-201ENST00000249923 IVLP07476 585 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 TCP1P17987 556 aaKnown RBP11.11□□□□□ -0.63
COPB1-201ENST00000249923 HOXA13P31271 388 aaPredicted RBP11.11□□□□□ -0.63
COPB1-201ENST00000249923 RAPGEF1Q13905 1077 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 GJB7Q6PEY0 223 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 AFAP1L1Q8TED9 768 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 TSG101Q99816 390 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 KDM3AQ9Y4C1 1321 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 A0A1W2PRG0 241 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 NR2F2P24468 414 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 USH1GQ495M9 461 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 TATDN1Q6P1N9 297 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 CEP57Q86XR8 500 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 KIAA0825Q8IV33 1275 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 NOX5Q96PH1 765 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 NT5C3AQ9H0P0 336 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 MSH4O15457 936 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 ECHS1P30084 290 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 USP11P51784 963 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 CYP4A11Q02928 519 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 SLC9C1Q4G0N8 1177 aa11.11□□□□□ -0.63
COPB1-201ENST00000249923 ODF2Q5BJF6 829 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms