RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 TRX3P25372 127 aa8.29□□□□□ -1.08
LSR1LSR1 PEX34P25584 144 aa8.29□□□□□ -1.08
LSR1LSR1 HSP30P25619 332 aa8.29□□□□□ -1.08
LSR1LSR1 RFA2P26754 273 aaKnown RBP8.29□□□□□ -1.08
LSR1LSR1 YJU2P28320 278 aaPredicted RBP8.29□□□□□ -1.08
LSR1LSR1 IDH1P28834 360 aaKnown RBP RIP-Chip data8.29□□□□□ -1.08not detected
LSR1LSR1 LHP1P33399 275 aaKnown RBP8.29□□□□□ -1.08
LSR1LSR1 CLG1P35190 452 aa8.29□□□□□ -1.08
LSR1LSR1 IML3P38265 245 aa8.29□□□□□ -1.08
LSR1LSR1 INM1P38710 295 aa8.29□□□□□ -1.08
LSR1LSR1 YHR127WP38833 243 aaKnown RBP8.29□□□□□ -1.08
LSR1LSR1 BOL3P39724 118 aa8.29□□□□□ -1.08
LSR1LSR1 SSY5P47002 699 aa8.29□□□□□ -1.08
LSR1LSR1 YJR098CP47139 656 aa8.29□□□□□ -1.08
LSR1LSR1 BIO3P50277 480 aa8.29□□□□□ -1.08
LSR1LSR1 SWC4P53201 476 aa8.29□□□□□ -1.08
LSR1LSR1 GOR1P53839 350 aa8.29□□□□□ -1.08
LSR1LSR1 IMP4P53941 290 aaKnown RBP8.29□□□□□ -1.08
LSR1LSR1 TIM11P81449 96 aaPredicted RBP8.29□□□□□ -1.08
LSR1LSR1 CCE1Q03702 353 aa8.29□□□□□ -1.08
LSR1LSR1 ATG38Q05789 226 aaKnown RBP8.29□□□□□ -1.08
LSR1LSR1 SPO77Q06134 477 aa8.29□□□□□ -1.08
LSR1LSR1 HTZ1Q12692 134 aaKnown RBP8.29□□□□□ -1.08
LSR1LSR1 SAM35P14693 329 aa8.28□□□□□ -1.08
LSR1LSR1 TRM1P15565 570 aaKnown RBP8.28□□□□□ -1.08
LSR1LSR1 VPS33P20795 691 aa8.28□□□□□ -1.08
LSR1LSR1 DBF2P22204 572 aa8.28□□□□□ -1.08
LSR1LSR1 YSR3P23501 404 aa8.28□□□□□ -1.08
LSR1LSR1 YIM1P28625 365 aa8.28□□□□□ -1.08
LSR1LSR1 SPT14P32363 452 aa8.28□□□□□ -1.08
LSR1LSR1 RPC34P32910 317 aa8.28□□□□□ -1.08
LSR1LSR1 PMT1P33775 817 aa8.28□□□□□ -1.08
LSR1LSR1 RPF2P36160 344 aaKnown RBP8.28□□□□□ -1.08
LSR1LSR1 CBP4P37267 147 aa8.28□□□□□ -1.08
LSR1LSR1 YHR219WP38900 624 aa8.28□□□□□ -1.08
LSR1LSR1 YFR020WP43600 232 aa8.28□□□□□ -1.08
LSR1LSR1 GCV1P48015 400 aa8.28□□□□□ -1.08
LSR1LSR1 YMR034CQ05131 434 aaPredicted RBP8.28□□□□□ -1.08
LSR1LSR1 YLR257WQ06146 321 aaKnown RBP8.28□□□□□ -1.08
LSR1LSR1 YPQ2Q06328 317 aa8.28□□□□□ -1.08
LSR1LSR1 GPM1P00950 247 aaKnown RBP8.27□□□□□ -1.09
LSR1LSR1 SIR3P06701 978 aa8.27□□□□□ -1.09
LSR1LSR1 CPA1P07258 411 aaKnown RBP8.27□□□□□ -1.09
LSR1LSR1 CAP2P13517 287 aa8.27□□□□□ -1.09
LSR1LSR1 MER1P16523 270 aa8.27□□□□□ -1.09
LSR1LSR1 MDH1P17505 334 aaKnown RBP RIP-Chip data8.27□□□□□ -1.09not detected
LSR1LSR1 CHA1P25379 360 aaKnown RBP8.27□□□□□ -1.09
LSR1LSR1 RER1P25560 188 aa8.27□□□□□ -1.09
LSR1LSR1 HIR2P32480 875 aa8.27□□□□□ -1.09
LSR1LSR1 SEC61P32915 480 aa8.27□□□□□ -1.09
LSR1LSR1 ZRT3P34240 503 aa8.27□□□□□ -1.09
LSR1LSR1 SAF1P38352 637 aa8.27□□□□□ -1.09
LSR1LSR1 RRG9P40156 214 aa8.27□□□□□ -1.09
LSR1LSR1 NTA1P40354 457 aa8.27□□□□□ -1.09
LSR1LSR1 PFA3P42836 336 aa8.27□□□□□ -1.09
LSR1LSR1 RET2P43621 546 aa8.27□□□□□ -1.09
LSR1LSR1 HXT16P47185 567 aa8.27□□□□□ -1.09
LSR1LSR1 MRH4P53166 561 aa8.27□□□□□ -1.09
LSR1LSR1 MRPL50P53724 139 aa8.27□□□□□ -1.09
LSR1LSR1 YMR178WQ03219 274 aaKnown RBP8.27□□□□□ -1.09
LSR1LSR1 PFA5Q03289 374 aa8.27□□□□□ -1.09
LSR1LSR1 TRM82Q03774 444 aa8.27□□□□□ -1.09
LSR1LSR1 CLP1Q08685 445 aaPredicted RBP8.27□□□□□ -1.09
LSR1LSR1 SIA1Q12212 622 aa8.27□□□□□ -1.09
LSR1LSR1 MRX4Q12467 430 aa8.27□□□□□ -1.09
LSR1LSR1 TY2A-LR1P0C2J4 438 aa8.26□□□□□ -1.09
LSR1LSR1 TY2A-FP0CX61 438 aa8.26□□□□□ -1.09
LSR1LSR1 TY2A-GR2P0CX62 438 aa8.26□□□□□ -1.09
LSR1LSR1 TFS1P14306 219 aa8.26□□□□□ -1.09
LSR1LSR1 SIR1P21691 654 aa8.26□□□□□ -1.09
LSR1LSR1 IDP1P21954 428 aaKnown RBP8.26□□□□□ -1.09
LSR1LSR1 RPS1BP23248 255 aaKnown RBP8.26□□□□□ -1.09
LSR1LSR1 PHO84P25297 587 aaKnown RBP8.26□□□□□ -1.09
LSR1LSR1 TY2A-CP25383 438 aa8.26□□□□□ -1.09
LSR1LSR1 IDH2P28241 369 aaKnown RBP8.26□□□□□ -1.09
LSR1LSR1 GMH1P36125 273 aa8.26□□□□□ -1.09
LSR1LSR1 GGC1P38988 300 aa8.26□□□□□ -1.09
LSR1LSR1 JHD1P40034 492 aa8.26□□□□□ -1.09
LSR1LSR1 PSA1P41940 361 aaKnown RBP8.26□□□□□ -1.09
LSR1LSR1 JHD2P47156 728 aaPredicted RBP8.26□□□□□ -1.09
LSR1LSR1 HMS2P47175 358 aa8.26□□□□□ -1.09
LSR1LSR1 OAZ1Q02803 292 aa8.26□□□□□ -1.09
LSR1LSR1 NOG1Q02892 647 aaKnown RBP8.26□□□□□ -1.09
LSR1LSR1 TY2A-DR2Q03483 438 aa8.26□□□□□ -1.09
LSR1LSR1 OPT2Q06593 877 aa8.26□□□□□ -1.09
LSR1LSR1 TY2A-BQ12260 438 aa8.26□□□□□ -1.09
LSR1LSR1 TY2A-OR2Q12293 438 aa8.26□□□□□ -1.09
LSR1LSR1 TY2A-DR1Q12392 438 aa8.26□□□□□ -1.09
LSR1LSR1 TY2A-OR1Q12439 438 aa8.26□□□□□ -1.09
LSR1LSR1 YBL113CQ7M4S9 792 aa8.26□□□□□ -1.09
LSR1LSR1 TY2A-DR3Q99303 438 aa8.26□□□□□ -1.09
LSR1LSR1 RPS21AP0C0V8 87 aaKnown RBP8.25□□□□□ -1.09
LSR1LSR1 RRP7P25368 297 aaPredicted RBP8.25□□□□□ -1.09
LSR1LSR1 YJU3P28321 313 aa8.25□□□□□ -1.09
LSR1LSR1 PXA2P34230 853 aa8.25□□□□□ -1.09
LSR1LSR1 LOT5P34234 306 aa8.25□□□□□ -1.09
LSR1LSR1 YPT35P38815 214 aaKnown RBP8.25□□□□□ -1.09
LSR1LSR1 LSM5P40089 93 aaKnown RBP8.25□□□□□ -1.09
LSR1LSR1 NDE1P40215 560 aa8.25□□□□□ -1.09
LSR1LSR1 ERG10P41338 398 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 5,963 RNA–protein pairs in 21 ms