RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 SLC28A3Q9HAS3 691 aa18.25■□□□□ 0.51
BRCA1-228ENST00000618469 IL23AQ9NPF7 189 aa18.25■□□□□ 0.51
BRCA1-228ENST00000618469 JADE2Q9NQC1 790 aa18.25■□□□□ 0.51
BRCA1-228ENST00000618469 NOD1Q9Y239 953 aa18.25■□□□□ 0.51
BRCA1-228ENST00000618469 PFKFB2O60825 505 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 PPFIA4O75335 1185 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 FGBP02675 491 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 LGALS2P05162 132 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 SUPT20HL2P0C7V6 817 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 CYP2C9P11712 490 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 KCNA2P16389 499 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 NEK4P51957 841 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 ARHGAP4P98171 946 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 RAB30Q15771 203 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 KIAA0753Q2KHM9 967 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 GIMAP8Q8ND71 665 aaPredicted RBP18.24■□□□□ 0.51
BRCA1-228ENST00000618469 BICD2Q8TD16 824 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 RASGRP4Q8TDF6 673 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 GPR20Q99678 358 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 MXRA8Q9BRK3 442 aa18.24■□□□□ 0.51
BRCA1-228ENST00000618469 ATP9AO75110 1047 aa18.23■□□□□ 0.51
BRCA1-228ENST00000618469 LARGE1O95461 756 aa18.23■□□□□ 0.51
BRCA1-228ENST00000618469 NLRP5P59047 1200 aa18.23■□□□□ 0.51
BRCA1-228ENST00000618469 TRIM50Q86XT4 487 aa18.23■□□□□ 0.51
BRCA1-228ENST00000618469 C7orf31Q8N865 590 aa18.23■□□□□ 0.51
BRCA1-228ENST00000618469 CYP2W1Q8TAV3 490 aa18.23■□□□□ 0.51
BRCA1-228ENST00000618469 HERVK_113Q902F9 699 aa18.23■□□□□ 0.51
BRCA1-228ENST00000618469 AIFM3Q96NN9 605 aa18.23■□□□□ 0.51
BRCA1-228ENST00000618469 CERS4Q9HA82 394 aa18.23■□□□□ 0.51
BRCA1-228ENST00000618469 SH3GLB2Q9NR46 395 aa18.23■□□□□ 0.51
BRCA1-228ENST00000618469 TELO2Q9Y4R8 837 aa18.23■□□□□ 0.51
BRCA1-228ENST00000618469 STK36Q9NRP7 1315 aa18.23■□□□□ 0.51
BRCA1-228ENST00000618469 HAS3O00219 553 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 BMP1P13497 986 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 ZNF76P36508 570 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 PTGISQ16647 500 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 CEP55Q53EZ4 464 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 KRT40Q6A162 431 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 MCTP2Q6DN12 878 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 GDF6Q6KF10 455 aaPredicted RBP18.22■□□□□ 0.51
BRCA1-228ENST00000618469 SESTD1Q86VW0 696 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 C16orf70Q9BSU1 422 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 WNT8AQ9H1J5 351 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 EPHX3Q9H6B9 360 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 KCNH7Q9NS40 1196 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 HDAC6Q9UBN7 1215 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 GTF2IRD1Q9UHL9 959 aa18.22■□□□□ 0.51
BRCA1-228ENST00000618469 PRRC2BQ5JSZ5 2229 aaKnown RBP18.21■□□□□ 0.51
BRCA1-228ENST00000618469 ZBBXA8MT70 800 aa18.21■□□□□ 0.51
BRCA1-228ENST00000618469 DTNBO60941 627 aa18.21■□□□□ 0.51
BRCA1-228ENST00000618469 ME3Q16798 604 aa18.21■□□□□ 0.51
BRCA1-228ENST00000618469 UTP14CQ5TAP6 766 aaKnown RBP18.21■□□□□ 0.51
BRCA1-228ENST00000618469 PPP2R2DQ66LE6 453 aa18.21■□□□□ 0.51
BRCA1-228ENST00000618469 NECAB1Q8N987 351 aa18.21■□□□□ 0.51
BRCA1-228ENST00000618469 GTF3C6Q969F1 213 aa18.21■□□□□ 0.51
BRCA1-228ENST00000618469 SCLYQ96I15 445 aa18.21■□□□□ 0.51
BRCA1-228ENST00000618469 JPH1Q9HDC5 661 aaPredicted RBP18.21■□□□□ 0.51
BRCA1-228ENST00000618469 XIRP2A4UGR9 3374 aa18.21■□□□□ 0.5
BRCA1-228ENST00000618469 BDP1A6H8Y1 2624 aa18.2■□□□□ 0.5
BRCA1-228ENST00000618469 H3BRB1 525 aa18.2■□□□□ 0.5
BRCA1-228ENST00000618469 MAFGO15525 162 aa18.2■□□□□ 0.5
BRCA1-228ENST00000618469 ARP10275 920 aa18.2■□□□□ 0.5
BRCA1-228ENST00000618469 TCF7P36402 384 aaPredicted RBP18.2■□□□□ 0.5
BRCA1-228ENST00000618469 CRYGNQ8WXF5 182 aa18.2■□□□□ 0.5
BRCA1-228ENST00000618469 TUT1Q9H6E5 874 aaKnown RBP18.2■□□□□ 0.5
BRCA1-228ENST00000618469 ZNF215Q9UL58 517 aaPredicted RBP18.2■□□□□ 0.5
BRCA1-228ENST00000618469 SCN5AQ14524 2016 aa18.2■□□□□ 0.5
BRCA1-228ENST00000618469 FAM86B1E9PN63 330 aa18.19■□□□□ 0.5
BRCA1-228ENST00000618469 FAM86B2P0C5J1 330 aa18.19■□□□□ 0.5
BRCA1-228ENST00000618469 PLA2G4DQ86XP0 818 aa18.19■□□□□ 0.5
BRCA1-228ENST00000618469 CCDC155Q8N6L0 562 aa18.19■□□□□ 0.5
BRCA1-228ENST00000618469 CTAGE1Q96RT6 745 aa18.19■□□□□ 0.5
BRCA1-228ENST00000618469 SDF4Q9BRK5 362 aa18.19■□□□□ 0.5
BRCA1-228ENST00000618469 C22orf23Q9BZE7 217 aa18.19■□□□□ 0.5
BRCA1-228ENST00000618469 TSPYL2Q9H2G4 693 aaPredicted RBP18.19■□□□□ 0.5
BRCA1-228ENST00000618469 AGO4Q9HCK5 861 aaKnown RBP18.19■□□□□ 0.5
BRCA1-228ENST00000618469 SLC9A2Q9UBY0 812 aa18.19■□□□□ 0.5
BRCA1-228ENST00000618469 PCDHA4Q9UN74 947 aa18.19■□□□□ 0.5
BRCA1-228ENST00000618469 NFASCO94856 1347 aa18.19■□□□□ 0.5
BRCA1-228ENST00000618469 IGLV3-22A0A075B6J6 115 aa18.18■□□□□ 0.5
BRCA1-228ENST00000618469 RBAK-RBAKDNI3L0D1 243 aa18.18■□□□□ 0.5
BRCA1-228ENST00000618469 MEIS1O00470 390 aa18.18■□□□□ 0.5
BRCA1-228ENST00000618469 PITPNM1O00562 1244 aa18.18■□□□□ 0.5
BRCA1-228ENST00000618469 CTDNEP1O95476 244 aa18.18■□□□□ 0.5
BRCA1-228ENST00000618469 CYP3A4P08684 503 aa18.18■□□□□ 0.5
BRCA1-228ENST00000618469 SMIM10L2AP0DMW4 78 aa18.18■□□□□ 0.5
BRCA1-228ENST00000618469 SMIM10L2BP0DMW5 78 aa18.18■□□□□ 0.5
BRCA1-228ENST00000618469 SETQ01105 290 aaPredicted RBP18.18■□□□□ 0.5
BRCA1-228ENST00000618469 ITGB3BPQ13352 177 aaPredicted RBP18.18■□□□□ 0.5
BRCA1-228ENST00000618469 BFSP2Q13515 415 aa18.18■□□□□ 0.5
BRCA1-228ENST00000618469 NIPA1Q7RTP0 329 aa18.18■□□□□ 0.5
BRCA1-228ENST00000618469 ORC3Q9UBD5 711 aaPredicted RBP18.18■□□□□ 0.5
BRCA1-228ENST00000618469 SLC4A7Q9Y6M7 1214 aa18.18■□□□□ 0.5
BRCA1-228ENST00000618469 EPOPA6NHQ4 379 aa18.17■□□□□ 0.5
BRCA1-228ENST00000618469 DDX39AO00148 427 aaKnown RBP18.17■□□□□ 0.5
BRCA1-228ENST00000618469 ZNF200P98182 395 aaPredicted RBP18.17■□□□□ 0.5
BRCA1-228ENST00000618469 BLIDQ8IZY5 108 aa18.17■□□□□ 0.5
BRCA1-228ENST00000618469 FAM177A1Q8N128 213 aaPredicted RBP18.17■□□□□ 0.5
BRCA1-228ENST00000618469 RETREG2Q8NC44 543 aa18.17■□□□□ 0.5
BRCA1-228ENST00000618469 DAGLBQ8NCG7 672 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms