RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 FPGSQ05932 587 aa19.13■□□□□ 0.65
TRIM28-215ENST00000601150 MFSD5Q6N075 450 aa19.13■□□□□ 0.65
TRIM28-215ENST00000601150 TRIM50Q86XT4 487 aa19.13■□□□□ 0.65
TRIM28-215ENST00000601150 ZNF577Q9BSK1 485 aa19.13■□□□□ 0.65
TRIM28-215ENST00000601150 TANC1Q9C0D5 1861 aa19.13■□□□□ 0.65
TRIM28-215ENST00000601150 TRIOBPQ9H2D6 2365 aa19.12■□□□□ 0.65
TRIM28-215ENST00000601150 WDR81Q562E7 1941 aa19.12■□□□□ 0.65
TRIM28-215ENST00000601150 MMP1P03956 469 aa19.12■□□□□ 0.65
TRIM28-215ENST00000601150 FOSBP53539 338 aa19.12■□□□□ 0.65
TRIM28-215ENST00000601150 ACTR2P61160 394 aa19.12■□□□□ 0.65
TRIM28-215ENST00000601150 INF2Q27J81 1249 aa19.12■□□□□ 0.65
TRIM28-215ENST00000601150 TDHQ8IZJ6 230 aa19.12■□□□□ 0.65
TRIM28-215ENST00000601150 TMEM199Q8N511 208 aa19.12■□□□□ 0.65
TRIM28-215ENST00000601150 OXER1Q8TDS5 423 aa19.12■□□□□ 0.65
TRIM28-215ENST00000601150 LENG9Q96B70 501 aa19.12■□□□□ 0.65
TRIM28-215ENST00000601150 TBC1D22BQ9NU19 505 aa19.12■□□□□ 0.65
TRIM28-215ENST00000601150 UMODL1Q5DID0 1318 aa19.11■□□□□ 0.65
TRIM28-215ENST00000601150 EMSYQ7Z589 1322 aa19.11■□□□□ 0.65
TRIM28-215ENST00000601150 CYP3A7-CYP3A51PA0A087WV96 503 aa19.11■□□□□ 0.65
TRIM28-215ENST00000601150 DDX39AO00148 427 aaKnown RBP19.11■□□□□ 0.65
TRIM28-215ENST00000601150 DHX15O43143 795 aaKnown RBP19.11■□□□□ 0.65
TRIM28-215ENST00000601150 SMIM10L2AP0DMW4 78 aa19.11■□□□□ 0.65
TRIM28-215ENST00000601150 SMIM10L2BP0DMW5 78 aa19.11■□□□□ 0.65
TRIM28-215ENST00000601150 CYP3A7P24462 503 aa19.11■□□□□ 0.65
TRIM28-215ENST00000601150 PPIGQ13427 754 aaKnown RBP eCLIP19.11■□□□□ 0.651e-8■□□□□ 10.2
TRIM28-215ENST00000601150 KRT40Q6A162 431 aa19.11■□□□□ 0.65
TRIM28-215ENST00000601150 MOXD1Q6UVY6 613 aa19.11■□□□□ 0.65
TRIM28-215ENST00000601150 GLG1Q92896 1179 aa19.11■□□□□ 0.65
TRIM28-215ENST00000601150 UIMC1Q96RL1 719 aa19.11■□□□□ 0.65
TRIM28-215ENST00000601150 SMARCAD1Q9H4L7 1026 aa19.11■□□□□ 0.65
TRIM28-215ENST00000601150 ERAP1Q9NZ08 941 aa19.11■□□□□ 0.65
TRIM28-215ENST00000601150 TCEAL9Q9UHQ7 104 aa19.11■□□□□ 0.65
TRIM28-215ENST00000601150 MYH9P35579 1960 aaKnown RBP19.11■□□□□ 0.65
TRIM28-215ENST00000601150 C17orf102A2RUQ5 167 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 LGR5O75473 907 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 CD2BP2O95400 341 aaKnown RBP19.1■□□□□ 0.65
TRIM28-215ENST00000601150 TDP2O95551 362 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 CCNE2O96020 404 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 Q4G0T1 1027 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 PIK3AP1Q6ZUJ8 805 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 NEK8Q86SG6 692 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 CCDC155Q8N6L0 562 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 FAM184AQ8NB25 1140 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 TMX3Q96JJ7 454 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 C8orf76Q96K31 380 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 MBOAT7Q96N66 472 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 CTAGE1Q96RT6 745 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 AZI2Q9H6S1 392 aa19.1■□□□□ 0.65
TRIM28-215ENST00000601150 SCN5AQ14524 2016 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 PITPNM1O00562 1244 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 MSH4O15457 936 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 ATG7O95352 703 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 GNAT1P11488 350 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 CSF2RAP15509 400 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 EPHB4P54760 987 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 CCL23P55773 120 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 KRT76Q01546 638 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 NR5A1Q13285 461 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 PTK7Q13308 1070 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 BFSP2Q13515 415 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 LETM2Q2VYF4 491 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 ZNF746Q6NUN9 644 aaPredicted RBP19.09■□□□□ 0.65
TRIM28-215ENST00000601150 DIS3L2Q8IYB7 885 aaKnown RBP19.09■□□□□ 0.65
TRIM28-215ENST00000601150 RETREG2Q8NC44 543 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 TNFRSF25Q93038 417 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 NAP1L4Q99733 375 aaKnown RBP19.09■□□□□ 0.65
TRIM28-215ENST00000601150 WNT8AQ9H1J5 351 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 RNPEPQ9H4A4 650 aa19.09■□□□□ 0.65
TRIM28-215ENST00000601150 BTBD18B2RXH4 712 aa19.08■□□□□ 0.64
TRIM28-215ENST00000601150 GCFC2P16383 781 aaKnown RBP19.08■□□□□ 0.64
TRIM28-215ENST00000601150 MARK3P27448 753 aa19.08■□□□□ 0.64
TRIM28-215ENST00000601150 HOXC8P31273 242 aa19.08■□□□□ 0.64
TRIM28-215ENST00000601150 ZNF200P98182 395 aaPredicted RBP19.08■□□□□ 0.64
TRIM28-215ENST00000601150 HIC1Q14526 733 aa19.08■□□□□ 0.64
TRIM28-215ENST00000601150 SAFBQ15424 915 aaKnown RBP eCLIP19.08■□□□□ 0.64
TRIM28-215ENST00000601150 MIS18BP1Q6P0N0 1132 aa19.08■□□□□ 0.64
TRIM28-215ENST00000601150 ABHD15Q6UXT9 468 aa19.08■□□□□ 0.64
TRIM28-215ENST00000601150 CAGE1Q8TC20 777 aa19.08■□□□□ 0.64
TRIM28-215ENST00000601150 SLC5A5Q92911 643 aa19.08■□□□□ 0.64
TRIM28-215ENST00000601150 PCYT2Q99447 389 aa19.08■□□□□ 0.64
TRIM28-215ENST00000601150 RIT2Q99578 217 aa19.08■□□□□ 0.64
TRIM28-215ENST00000601150 DDX25Q9UHL0 483 aaKnown RBP19.08■□□□□ 0.64
TRIM28-215ENST00000601150 IGKV6D-21A0A0A0MT36 114 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 GAS7O60861 476 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 STAT5BP51692 787 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 GUCY1B3Q02153 619 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 SHHQ15465 462 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 EARS2Q5JPH6 523 aaKnown RBP19.07■□□□□ 0.64
TRIM28-215ENST00000601150 C9orf50Q5SZB4 431 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 LRCH2Q5VUJ6 765 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 FAM160B1Q5W0V3 765 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 PPP4R3AQ6IN85 833 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 PLPPR4Q7Z2D5 763 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 SMAP1Q8IYB5 467 aaPredicted RBP19.07■□□□□ 0.64
TRIM28-215ENST00000601150 AFAP1L1Q8TED9 768 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 DHX38Q92620 1227 aaKnown RBP19.07■□□□□ 0.64
TRIM28-215ENST00000601150 ATP6V0A1Q93050 837 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 TEKT3Q9BXF9 490 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 IL23AQ9NPF7 189 aa19.07■□□□□ 0.64
TRIM28-215ENST00000601150 SETD4Q9NVD3 440 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms