RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 IL27Q8NEV9 243 aa15.74■□□□□ 0.11
UPF1-205ENST00000598209 UIMC1Q96RL1 719 aa15.74■□□□□ 0.11
UPF1-205ENST00000598209 LLPHQ9BRT6 129 aaKnown RBP15.74■□□□□ 0.11
UPF1-205ENST00000598209 ZNF577Q9BSK1 485 aa15.74■□□□□ 0.11
UPF1-205ENST00000598209 ZNF215Q9UL58 517 aaPredicted RBP15.74■□□□□ 0.11
UPF1-205ENST00000598209 NOD1Q9Y239 953 aa15.74■□□□□ 0.11
UPF1-205ENST00000598209 CCDC194A0A1B0GVG4 234 aa15.73■□□□□ 0.11
UPF1-205ENST00000598209 DDX39AO00148 427 aaKnown RBP15.73■□□□□ 0.11
UPF1-205ENST00000598209 IPO5O00410 1097 aaKnown RBP15.73■□□□□ 0.11
UPF1-205ENST00000598209 ACTR2P61160 394 aa15.73■□□□□ 0.11
UPF1-205ENST00000598209 TMEM199Q8N511 208 aa15.73■□□□□ 0.11
UPF1-205ENST00000598209 OXER1Q8TDS5 423 aa15.73■□□□□ 0.11
UPF1-205ENST00000598209 LENG9Q96B70 501 aa15.73■□□□□ 0.11
UPF1-205ENST00000598209 DHX15O43143 795 aaKnown RBP15.72■□□□□ 0.11
UPF1-205ENST00000598209 SMIM10L2AP0DMW4 78 aa15.72■□□□□ 0.11
UPF1-205ENST00000598209 SMIM10L2BP0DMW5 78 aa15.72■□□□□ 0.11
UPF1-205ENST00000598209 CSF2RAP15509 400 aa15.72■□□□□ 0.11
UPF1-205ENST00000598209 KRT2P35908 639 aa15.72■□□□□ 0.11
UPF1-205ENST00000598209 EPHB4P54760 987 aa15.72■□□□□ 0.11
UPF1-205ENST00000598209 CCL23P55773 120 aa15.72■□□□□ 0.11
UPF1-205ENST00000598209 PPIGQ13427 754 aaKnown RBP eCLIP15.72■□□□□ 0.112e-7■■□□□ 11.8
UPF1-205ENST00000598209 TRIM29Q14134 588 aa15.72■□□□□ 0.11
UPF1-205ENST00000598209 INF2Q27J81 1249 aa15.72■□□□□ 0.11
UPF1-205ENST00000598209 CTAGE1Q96RT6 745 aa15.72■□□□□ 0.11
UPF1-205ENST00000598209 WNT8AQ9H1J5 351 aa15.72■□□□□ 0.11
UPF1-205ENST00000598209 BRMS1Q9HCU9 246 aa15.72■□□□□ 0.11
UPF1-205ENST00000598209 EMSYQ7Z589 1322 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 RANBP2P49792 3224 aaKnown RBP15.71■□□□□ 0.11
UPF1-205ENST00000598209 C17orf102A2RUQ5 167 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 LGR5O75473 907 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 CD2BP2O95400 341 aaKnown RBP15.71■□□□□ 0.11
UPF1-205ENST00000598209 TDP2O95551 362 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 CCNE2O96020 404 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 MMP1P03956 469 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 HMGN5P82970 282 aaKnown RBP15.71■□□□□ 0.11
UPF1-205ENST00000598209 ZNF200P98182 395 aaPredicted RBP15.71■□□□□ 0.11
UPF1-205ENST00000598209 NR5A1Q13285 461 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 BFSP2Q13515 415 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 HIC1Q14526 733 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 SHHQ15465 462 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 C9orf50Q5SZB4 431 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 KRT40Q6A162 431 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 PIK3AP1Q6ZUJ8 805 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 GLG1Q92896 1179 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 PCYT2Q99447 389 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 RNPEPQ9H4A4 650 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 SMARCAD1Q9H4L7 1026 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 TBC1D22BQ9NU19 505 aa15.71■□□□□ 0.11
UPF1-205ENST00000598209 CYP3A7-CYP3A51PA0A087WV96 503 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 MSH4O15457 936 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 ATG7O95352 703 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 CYP3A7P24462 503 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 MARK3P27448 753 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 HOXC8P31273 242 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 PTK7Q13308 1070 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 LETM2Q2VYF4 491 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 Q4G0T1 1027 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 MOXD1Q6UVY6 613 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 NEK8Q86SG6 692 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 CCDC155Q8N6L0 562 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 RETREG2Q8NC44 543 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 CAGE1Q8TC20 777 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 DHX38Q92620 1227 aaKnown RBP15.7■□□□□ 0.1
UPF1-205ENST00000598209 TNFRSF25Q93038 417 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 SCLYQ96I15 445 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 MBOAT7Q96N66 472 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 AZI2Q9H6S1 392 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 ERAP1Q9NZ08 941 aa15.7■□□□□ 0.1
UPF1-205ENST00000598209 FAM205CA6NFA0 338 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 BTBD18B2RXH4 712 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 PITPNM1O00562 1244 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 ACRP10323 421 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 MCM2P49736 904 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 FXR1P51114 621 aaKnown RBP eCLIP15.69■□□□□ 0.1
UPF1-205ENST00000598209 GUCY1B3Q02153 619 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 EARS2Q5JPH6 523 aaKnown RBP15.69■□□□□ 0.1
UPF1-205ENST00000598209 ZNF746Q6NUN9 644 aaPredicted RBP15.69■□□□□ 0.1
UPF1-205ENST00000598209 ABHD15Q6UXT9 468 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 DIS3L2Q8IYB7 885 aaKnown RBP15.69■□□□□ 0.1
UPF1-205ENST00000598209 FAM184AQ8NB25 1140 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 ATP6V0A1Q93050 837 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 TMX3Q96JJ7 454 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 C8orf76Q96K31 380 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 IL23AQ9NPF7 189 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 SETD4Q9NVD3 440 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 DDX25Q9UHL0 483 aaKnown RBP15.69■□□□□ 0.1
UPF1-205ENST00000598209 TCEAL9Q9UHQ7 104 aa15.69■□□□□ 0.1
UPF1-205ENST00000598209 TET1Q8NFU7 2136 aa15.68■□□□□ 0.1
UPF1-205ENST00000598209 IGKV6D-21A0A0A0MT36 114 aa15.68■□□□□ 0.1
UPF1-205ENST00000598209 BACH1O14867 736 aa15.68■□□□□ 0.1
UPF1-205ENST00000598209 TREHO43280 583 aa15.68■□□□□ 0.1
UPF1-205ENST00000598209 GNAT1P11488 350 aa15.68■□□□□ 0.1
UPF1-205ENST00000598209 STAT5BP51692 787 aa15.68■□□□□ 0.1
UPF1-205ENST00000598209 KRT76Q01546 638 aa15.68■□□□□ 0.1
UPF1-205ENST00000598209 LRIT3Q3SXY7 679 aa15.68■□□□□ 0.1
UPF1-205ENST00000598209 LRCH2Q5VUJ6 765 aa15.68■□□□□ 0.1
UPF1-205ENST00000598209 MIS18BP1Q6P0N0 1132 aa15.68■□□□□ 0.1
UPF1-205ENST00000598209 C16orf59Q7L2K0 433 aa15.68■□□□□ 0.1
UPF1-205ENST00000598209 PLPPR4Q7Z2D5 763 aa15.68■□□□□ 0.1
UPF1-205ENST00000598209 AFAP1L1Q8TED9 768 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms