RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 IL31RAQ8NI17 732 aa11.77□□□□□ -0.53
TRIM28-210ENST00000597618 P2RX5Q93086 422 aa11.77□□□□□ -0.53
TRIM28-210ENST00000597618 VAT1LQ9HCJ6 419 aa11.77□□□□□ -0.53
TRIM28-210ENST00000597618 SETD4Q9NVD3 440 aa11.77□□□□□ -0.53
TRIM28-210ENST00000597618 PLAGL2Q9UPG8 496 aa11.77□□□□□ -0.53
TRIM28-210ENST00000597618 SALL3Q9BXA9 1300 aa11.77□□□□□ -0.53
TRIM28-210ENST00000597618 TRIM6-TRIM34B2RNG4 842 aa11.76□□□□□ -0.53
TRIM28-210ENST00000597618 GHRP10912 638 aa11.76□□□□□ -0.53
TRIM28-210ENST00000597618 HOXA13P31271 388 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-210ENST00000597618 ARHGAP4P98171 946 aa11.76□□□□□ -0.53
TRIM28-210ENST00000597618 NEDD9Q14511 834 aa11.76□□□□□ -0.53
TRIM28-210ENST00000597618 TAF2Q6P1X5 1199 aa11.76□□□□□ -0.53
TRIM28-210ENST00000597618 ZNF589Q86UQ0 364 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-210ENST00000597618 LMBR1Q8WVP7 490 aa11.76□□□□□ -0.53
TRIM28-210ENST00000597618 ZNF689Q96CS4 500 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-210ENST00000597618 ZSCAN10Q96SZ4 725 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-210ENST00000597618 ALG13Q9NP73 1137 aaKnown RBP11.76□□□□□ -0.53
TRIM28-210ENST00000597618 CLEC1BQ9P126 229 aa11.76□□□□□ -0.53
TRIM28-210ENST00000597618 ZBTB47Q9UFB7 747 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-210ENST00000597618 PCDHA1Q9Y5I3 950 aa11.76□□□□□ -0.53
TRIM28-210ENST00000597618 PTPRZ1P23471 2315 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-210ENST00000597618 ATG2AQ2TAZ0 1938 aa11.76□□□□□ -0.53
TRIM28-210ENST00000597618 GCOM1H8Y6P7 765 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-210ENST00000597618 ZNF213O14771 459 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 ZBTB5O15062 677 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 KDM4AO75164 1064 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 STAM2O75886 525 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 DGKIO75912 1065 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 CHRNA1P02708 482 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 POLR2MP0CAP2 368 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 MFAP1P55081 439 aaKnown RBP11.75□□□□□ -0.53
TRIM28-210ENST00000597618 RRP1P56182 461 aaKnown RBP11.75□□□□□ -0.53
TRIM28-210ENST00000597618 ADAM17P78536 824 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 TRAF1Q13077 416 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 CAMK1Q14012 370 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 LPIN1Q14693 890 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 RSPH3Q86UC2 560 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 TRIM50Q86XT4 487 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 ENAHQ8N8S7 591 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-210ENST00000597618 ATOH1Q92858 354 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-210ENST00000597618 GPKOWQ92917 476 aaPredicted RBP eCLIP11.75□□□□□ -0.53
TRIM28-210ENST00000597618 GPR20Q99678 358 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 PHF7Q9BWX1 381 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-210ENST00000597618 EHMT1Q9H9B1 1298 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 FAM86C1Q9NVL1 165 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 USP15Q9Y4E8 981 aaPredicted RBP11.75□□□□□ -0.53
TRIM28-210ENST00000597618 NRCAMQ92823 1304 aa11.75□□□□□ -0.53
TRIM28-210ENST00000597618 RIF1Q5UIP0 2472 aaKnown RBP11.75□□□□□ -0.53
TRIM28-210ENST00000597618 VPS13AQ96RL7 3174 aa11.74□□□□□ -0.53
TRIM28-210ENST00000597618 ENPP3O14638 875 aa11.74□□□□□ -0.53
TRIM28-210ENST00000597618 PPP1R11O60927 126 aaPredicted RBP11.74□□□□□ -0.53
TRIM28-210ENST00000597618 ITGB1P05556 798 aa11.74□□□□□ -0.53
TRIM28-210ENST00000597618 ICAM3P32942 547 aa11.74□□□□□ -0.53
TRIM28-210ENST00000597618 NRIP1P48552 1158 aa11.74□□□□□ -0.53
TRIM28-210ENST00000597618 NUBP1P53384 320 aa11.74□□□□□ -0.53
TRIM28-210ENST00000597618 VCPP55072 806 aaKnown RBP11.74□□□□□ -0.53
TRIM28-210ENST00000597618 NMIQ13287 307 aaPredicted RBP11.74□□□□□ -0.53
TRIM28-210ENST00000597618 CYFIP1Q7L576 1253 aa11.74□□□□□ -0.53
TRIM28-210ENST00000597618 ADGRD2Q7Z7M1 963 aa11.74□□□□□ -0.53
TRIM28-210ENST00000597618 CMTR2Q8IYT2 770 aaKnown RBP11.74□□□□□ -0.53
TRIM28-210ENST00000597618 ASIC4Q96FT7 647 aa11.74□□□□□ -0.53
TRIM28-210ENST00000597618 INPP4AQ96PE3 977 aaPredicted RBP11.74□□□□□ -0.53
TRIM28-210ENST00000597618 MRPL42Q9Y6G3 142 aaKnown RBP11.74□□□□□ -0.53
TRIM28-210ENST00000597618 MYH7BA7E2Y1 1941 aa11.74□□□□□ -0.53
TRIM28-210ENST00000597618 DMDP11532 3685 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 FSD2A1L4K1 749 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 FIBPO43427 364 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 GLP2RO95838 553 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 ATF7P17544 494 aaPredicted RBP11.73□□□□□ -0.53
TRIM28-210ENST00000597618 DNAJB1P25685 340 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 MGAT3Q09327 533 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 FBXO47Q5MNV8 452 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 UTP14CQ5TAP6 766 aaKnown RBP11.73□□□□□ -0.53
TRIM28-210ENST00000597618 RUFY4Q6ZNE9 571 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 TSHZ1Q6ZSZ6 1077 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 FCHSD1Q86WN1 690 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 KMT2EQ8IZD2 1858 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 KLHL23Q8NBE8 558 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 SPPL3Q8TCT6 385 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 MTMR8Q96EF0 704 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 ZFP91Q96JP5 570 aaPredicted RBP11.73□□□□□ -0.53
TRIM28-210ENST00000597618 RPGRIP1Q96KN7 1286 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 UBAC1Q9BSL1 405 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 BCAS3Q9H6U6 928 aa11.73□□□□□ -0.53
TRIM28-210ENST00000597618 BARX2Q9UMQ3 279 aaPredicted RBP11.73□□□□□ -0.53
TRIM28-210ENST00000597618 FRMPD4Q14CM0 1322 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 SPATA31C2B4DYI2 1134 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 B4E1Z4 1266 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 KLRF2D3W0D1 207 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 RPLP2P05387 115 aaKnown RBP11.72□□□□□ -0.53
TRIM28-210ENST00000597618 AVPR2P30518 371 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 PDE1AP54750 535 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 PPFIA1Q13136 1202 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 PTPN21Q16825 1174 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 IFIT1BQ5T764 474 aaKnown RBP11.72□□□□□ -0.53
TRIM28-210ENST00000597618 RBM23Q86U06 439 aaKnown RBP11.72□□□□□ -0.53
TRIM28-210ENST00000597618 NPAS4Q8IUM7 802 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 STAG2Q8N3U4 1231 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 POF1BQ8WVV4 589 aa11.72□□□□□ -0.53
TRIM28-210ENST00000597618 FTHL17Q9BXU8 183 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms