RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 BTBD18B2RXH4 712 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 DHX15O43143 795 aaKnown RBP17.03■□□□□ 0.32
UPF1-202ENST00000594243 ATG7O95352 703 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 FOSBP53539 338 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 ACTR2P61160 394 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 NR5A1Q13285 461 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 PTGISQ16647 500 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 PPP4R3AQ6IN85 833 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 FBXO18Q8NFZ0 1043 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 GLG1Q92896 1179 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 BADQ92934 168 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 LENG9Q96B70 501 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 AZI2Q9H6S1 392 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 TRMT13Q9NUP7 481 aaKnown RBP17.03■□□□□ 0.32
UPF1-202ENST00000594243 ERAP1Q9NZ08 941 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 HDAC6Q9UBN7 1215 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 COLQQ9Y215 455 aaPredicted RBP17.03■□□□□ 0.32
UPF1-202ENST00000594243 TELO2Q9Y4R8 837 aa17.03■□□□□ 0.32
UPF1-202ENST00000594243 DDX39AO00148 427 aaKnown RBP17.02■□□□□ 0.32
UPF1-202ENST00000594243 MSH4O15457 936 aa17.02■□□□□ 0.32
UPF1-202ENST00000594243 GCFC2P16383 781 aaKnown RBP17.02■□□□□ 0.32
UPF1-202ENST00000594243 GUCY1B3Q02153 619 aa17.02■□□□□ 0.32
UPF1-202ENST00000594243 HABP4Q5JVS0 413 aaKnown RBP17.02■□□□□ 0.32
UPF1-202ENST00000594243 MFSD5Q6N075 450 aa17.02■□□□□ 0.32
UPF1-202ENST00000594243 ZNF746Q6NUN9 644 aaPredicted RBP17.02■□□□□ 0.32
UPF1-202ENST00000594243 TMEM199Q8N511 208 aa17.02■□□□□ 0.32
UPF1-202ENST00000594243 PPP1R13LQ8WUF5 828 aa17.02■□□□□ 0.32
UPF1-202ENST00000594243 TNPO1Q92973 898 aaKnown RBP17.02■□□□□ 0.32
UPF1-202ENST00000594243 TNFRSF25Q93038 417 aa17.02■□□□□ 0.32
UPF1-202ENST00000594243 MBOAT7Q96N66 472 aa17.02■□□□□ 0.32
UPF1-202ENST00000594243 RIT2Q99578 217 aa17.02■□□□□ 0.32
UPF1-202ENST00000594243 UBE2OQ9C0C9 1292 aaKnown RBP17.02■□□□□ 0.32
UPF1-202ENST00000594243 HIPK3Q9H422 1215 aa17.02■□□□□ 0.32
UPF1-202ENST00000594243 DDX25Q9UHL0 483 aaKnown RBP17.02■□□□□ 0.32
UPF1-202ENST00000594243 EMSYQ7Z589 1322 aa17.01■□□□□ 0.31
UPF1-202ENST00000594243 SCN10AQ9Y5Y9 1956 aa17.01■□□□□ 0.31
UPF1-202ENST00000594243 CCNT1O60563 726 aaKnown RBP17.01■□□□□ 0.31
UPF1-202ENST00000594243 LGR5O75473 907 aa17.01■□□□□ 0.31
UPF1-202ENST00000594243 TDP2O95551 362 aa17.01■□□□□ 0.31
UPF1-202ENST00000594243 GNAT1P11488 350 aa17.01■□□□□ 0.31
UPF1-202ENST00000594243 ITGB8P26012 769 aa17.01■□□□□ 0.31
UPF1-202ENST00000594243 KRT76Q01546 638 aa17.01■□□□□ 0.31
UPF1-202ENST00000594243 GDF6Q6KF10 455 aaPredicted RBP17.01■□□□□ 0.31
UPF1-202ENST00000594243 MIS18BP1Q6P0N0 1132 aa17.01■□□□□ 0.31
UPF1-202ENST00000594243 PLPPR4Q7Z2D5 763 aa17.01■□□□□ 0.31
UPF1-202ENST00000594243 SMAP1Q8IYB5 467 aaPredicted RBP17.01■□□□□ 0.31
UPF1-202ENST00000594243 PPP1R12CQ9BZL4 782 aa17.01■□□□□ 0.31
UPF1-202ENST00000594243 PRO3102Q9H379 93 aa17.01■□□□□ 0.31
UPF1-202ENST00000594243 RANBP2P49792 3224 aaKnown RBP17.01■□□□□ 0.31
UPF1-202ENST00000594243 TRIOBPQ9H2D6 2365 aa17.01■□□□□ 0.31
UPF1-202ENST00000594243 A0A1W2PPC1 479 aa17■□□□□ 0.31
UPF1-202ENST00000594243 C17orf102A2RUQ5 167 aa17■□□□□ 0.31
UPF1-202ENST00000594243 GAS7O60861 476 aa17■□□□□ 0.31
UPF1-202ENST00000594243 CCNE2O96020 404 aa17■□□□□ 0.31
UPF1-202ENST00000594243 SMIM10L2AP0DMW4 78 aa17■□□□□ 0.31
UPF1-202ENST00000594243 SMIM10L2BP0DMW5 78 aa17■□□□□ 0.31
UPF1-202ENST00000594243 CYP2C9P11712 490 aa17■□□□□ 0.31
UPF1-202ENST00000594243 SLC26A2P50443 739 aa17■□□□□ 0.31
UPF1-202ENST00000594243 STAT5BP51692 787 aa17■□□□□ 0.31
UPF1-202ENST00000594243 FPGSQ05932 587 aa17■□□□□ 0.31
UPF1-202ENST00000594243 GNL2Q13823 731 aaKnown RBP17■□□□□ 0.31
UPF1-202ENST00000594243 EARS2Q5JPH6 523 aaKnown RBP17■□□□□ 0.31
UPF1-202ENST00000594243 ABHD15Q6UXT9 468 aa17■□□□□ 0.31
UPF1-202ENST00000594243 TRIM50Q86XT4 487 aa17■□□□□ 0.31
UPF1-202ENST00000594243 CCDC155Q8N6L0 562 aa17■□□□□ 0.31
UPF1-202ENST00000594243 SLC5A5Q92911 643 aa17■□□□□ 0.31
UPF1-202ENST00000594243 UIMC1Q96RL1 719 aa17■□□□□ 0.31
UPF1-202ENST00000594243 NOC4LQ9BVI4 516 aaKnown RBP17■□□□□ 0.31
UPF1-202ENST00000594243 TEKT3Q9BXF9 490 aa17■□□□□ 0.31
UPF1-202ENST00000594243 FOXP1Q9H334 677 aaPredicted RBP17■□□□□ 0.31
UPF1-202ENST00000594243 RNPEPQ9H4A4 650 aa17■□□□□ 0.31
UPF1-202ENST00000594243 SMC3Q9UQE7 1217 aa17■□□□□ 0.31
UPF1-202ENST00000594243 NRCAMQ92823 1304 aa16.99■□□□□ 0.31
UPF1-202ENST00000594243 IGKV6D-21A0A0A0MT36 114 aa16.99■□□□□ 0.31
UPF1-202ENST00000594243 PSAPP07602 524 aa16.99■□□□□ 0.31
UPF1-202ENST00000594243 GJB2P29033 226 aa16.99■□□□□ 0.31
UPF1-202ENST00000594243 BFSP2Q13515 415 aa16.99■□□□□ 0.31
UPF1-202ENST00000594243 LRCH2Q5VUJ6 765 aa16.99■□□□□ 0.31
UPF1-202ENST00000594243 FAM160B1Q5W0V3 765 aa16.99■□□□□ 0.31
UPF1-202ENST00000594243 RETREG2Q8NC44 543 aa16.99■□□□□ 0.31
UPF1-202ENST00000594243 FAM20AQ96MK3 541 aa16.99■□□□□ 0.31
UPF1-202ENST00000594243 PCYT2Q99447 389 aa16.99■□□□□ 0.31
UPF1-202ENST00000594243 SAMM50Q9Y512 469 aa16.99■□□□□ 0.31
UPF1-202ENST00000594243 PCDHA10Q9Y5I2 948 aa16.99■□□□□ 0.31
UPF1-202ENST00000594243 DOCK5Q9H7D0 1870 aa16.99■□□□□ 0.31
UPF1-202ENST00000594243 WDR64B1ANS9 1081 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 PITPNM1O00562 1244 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 BACH1O14867 736 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 TBX3O15119 743 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 MARCH6O60337 910 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 PSMD10O75832 226 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 BAG4O95429 457 aaKnown RBP16.98■□□□□ 0.31
UPF1-202ENST00000594243 MARK3P27448 753 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 SFNP31947 248 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 CYP2C18P33260 490 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 PTK7Q13308 1070 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 CUL4AQ13619 759 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 SWSAP1Q6NVH7 229 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 ETNPPLQ8TBG4 499 aa16.98■□□□□ 0.31
UPF1-202ENST00000594243 CAGE1Q8TC20 777 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms