RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 RXRAP19793 462 aa17.17■□□□□ 0.34
CLN3-228ENST00000567804 LIFRP42702 1097 aa17.17■□□□□ 0.34
CLN3-228ENST00000567804 GIMAP8Q8ND71 665 aaPredicted RBP17.17■□□□□ 0.34
CLN3-228ENST00000567804 GPRASP2Q96D09 838 aa17.17■□□□□ 0.34
CLN3-228ENST00000567804 C17orf80Q9BSJ5 609 aa17.17■□□□□ 0.34
CLN3-228ENST00000567804 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.16■□□□□ 0.34
CLN3-228ENST00000567804 ATP9AO75110 1047 aa17.16■□□□□ 0.34
CLN3-228ENST00000567804 CALM1P0DP23 149 aa17.16■□□□□ 0.34
CLN3-228ENST00000567804 CALM2P0DP24 149 aa17.16■□□□□ 0.34
CLN3-228ENST00000567804 CALM3P0DP25 149 aa17.16■□□□□ 0.34
CLN3-228ENST00000567804 KCNA2P16389 499 aa17.16■□□□□ 0.34
CLN3-228ENST00000567804 TCF7P36402 384 aaPredicted RBP17.16■□□□□ 0.34
CLN3-228ENST00000567804 ARHGAP4P98171 946 aa17.16■□□□□ 0.34
CLN3-228ENST00000567804 FAM26DQ5JW98 314 aa17.16■□□□□ 0.34
CLN3-228ENST00000567804 FBXO22Q8NEZ5 403 aa17.16■□□□□ 0.34
CLN3-228ENST00000567804 TOP1MTQ969P6 601 aa17.16■□□□□ 0.34
CLN3-228ENST00000567804 CDHR1Q96JP9 859 aa17.16■□□□□ 0.34
CLN3-228ENST00000567804 ESYT1Q9BSJ8 1104 aa17.16■□□□□ 0.34
CLN3-228ENST00000567804 PSTPIP2Q9H939 334 aa17.16■□□□□ 0.34
CLN3-228ENST00000567804 NRCAMQ92823 1304 aa17.16■□□□□ 0.34
CLN3-228ENST00000567804 ITGB5P18084 799 aa17.15■□□□□ 0.34
CLN3-228ENST00000567804 CREB3L3Q68CJ9 461 aa17.15■□□□□ 0.34
CLN3-228ENST00000567804 RAB11FIP4Q86YS3 637 aa17.15■□□□□ 0.34
CLN3-228ENST00000567804 APBB2Q92870 758 aa17.15■□□□□ 0.34
CLN3-228ENST00000567804 SAMD11Q96NU1 681 aa17.15■□□□□ 0.34
CLN3-228ENST00000567804 KIAA1671Q9BY89 1806 aa17.14■□□□□ 0.34
CLN3-228ENST00000567804 GSTTP1A0A1W2PQM5 241 aa17.14■□□□□ 0.33
CLN3-228ENST00000567804 hCG_1642624A0A1W2PR95 340 aa17.14■□□□□ 0.33
CLN3-228ENST00000567804 NECTIN1Q15223 517 aa17.14■□□□□ 0.33
CLN3-228ENST00000567804 UBE2SQ16763 222 aa17.14■□□□□ 0.33
CLN3-228ENST00000567804 TMTC3Q6ZXV5 915 aa17.14■□□□□ 0.33
CLN3-228ENST00000567804 YME1L1Q96TA2 773 aa17.14■□□□□ 0.33
CLN3-228ENST00000567804 LRRC2Q9BYS8 371 aa17.14■□□□□ 0.33
CLN3-228ENST00000567804 IFIH1Q9BYX4 1025 aaKnown RBP17.14■□□□□ 0.33
CLN3-228ENST00000567804 UBE2ZQ9H832 354 aaPredicted RBP17.14■□□□□ 0.33
CLN3-228ENST00000567804 UBIAD1Q9Y5Z9 338 aa17.14■□□□□ 0.33
CLN3-228ENST00000567804 SLC12A7Q9Y666 1083 aa17.14■□□□□ 0.33
CLN3-228ENST00000567804 TTC3P53804 2025 aa17.14■□□□□ 0.33
CLN3-228ENST00000567804 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.13■□□□□ 0.33
CLN3-228ENST00000567804 SPDYE3A6NKU9 549 aa17.13■□□□□ 0.33
CLN3-228ENST00000567804 UPP2O95045 317 aa17.13■□□□□ 0.33
CLN3-228ENST00000567804 PPFIA1Q13136 1202 aa17.13■□□□□ 0.33
CLN3-228ENST00000567804 EPC2Q52LR7 807 aa17.13■□□□□ 0.33
CLN3-228ENST00000567804 TAF2Q6P1X5 1199 aa17.13■□□□□ 0.33
CLN3-228ENST00000567804 RUFY4Q6ZNE9 571 aa17.13■□□□□ 0.33
CLN3-228ENST00000567804 RPAINQ86UA6 219 aa17.13■□□□□ 0.33
CLN3-228ENST00000567804 CCDC82Q8N4S0 544 aa17.13■□□□□ 0.33
CLN3-228ENST00000567804 FANCBQ8NB91 859 aa17.13■□□□□ 0.33
CLN3-228ENST00000567804 SEPT1Q8WYJ6 367 aa17.13■□□□□ 0.33
CLN3-228ENST00000567804 C1QTNF1Q9BXJ1 281 aa17.13■□□□□ 0.33
CLN3-228ENST00000567804 RAPGEFL1Q9UHV5 662 aa17.13■□□□□ 0.33
CLN3-228ENST00000567804 CHRNA1P02708 482 aa17.12■□□□□ 0.33
CLN3-228ENST00000567804 MGAT3Q09327 533 aa17.12■□□□□ 0.33
CLN3-228ENST00000567804 MTMR1Q13613 665 aa17.12■□□□□ 0.33
CLN3-228ENST00000567804 SGMS1Q86VZ5 419 aa17.12■□□□□ 0.33
CLN3-228ENST00000567804 MICU3Q86XE3 530 aa17.12■□□□□ 0.33
CLN3-228ENST00000567804 MRPL38Q96DV4 380 aaKnown RBP17.12■□□□□ 0.33
CLN3-228ENST00000567804 EHMT1Q9H9B1 1298 aa17.12■□□□□ 0.33
CLN3-228ENST00000567804 ANO2Q9NQ90 1003 aa17.12■□□□□ 0.33
CLN3-228ENST00000567804 ERAP1Q9NZ08 941 aa17.12■□□□□ 0.33
CLN3-228ENST00000567804 PKD2L1Q9P0L9 805 aa17.12■□□□□ 0.33
CLN3-228ENST00000567804 PCDHA6Q9UN73 950 aa17.12■□□□□ 0.33
CLN3-228ENST00000567804 PCDHA8Q9Y5H6 950 aa17.12■□□□□ 0.33
CLN3-228ENST00000567804 H3BNC9 293 aa17.11■□□□□ 0.33
CLN3-228ENST00000567804 MARK3P27448 753 aa17.11■□□□□ 0.33
CLN3-228ENST00000567804 GRIK4Q16099 956 aa17.11■□□□□ 0.33
CLN3-228ENST00000567804 PTPROQ16827 1216 aa17.11■□□□□ 0.33
CLN3-228ENST00000567804 HEATR3Q7Z4Q2 680 aa17.11■□□□□ 0.33
CLN3-228ENST00000567804 TMEM192Q8IY95 271 aa17.11■□□□□ 0.33
CLN3-228ENST00000567804 SMARCAD1Q9H4L7 1026 aa17.11■□□□□ 0.33
CLN3-228ENST00000567804 JADE2Q9NQC1 790 aa17.11■□□□□ 0.33
CLN3-228ENST00000567804 TUBE1Q9UJT0 475 aa17.11■□□□□ 0.33
CLN3-228ENST00000567804 CNTNAP5Q8WYK1 1306 aa17.11■□□□□ 0.33
CLN3-228ENST00000567804 MYO7AQ13402 2215 aa17.11■□□□□ 0.33
CLN3-228ENST00000567804 WDR81Q562E7 1941 aa17.1■□□□□ 0.33
CLN3-228ENST00000567804 MBLAC1A4D2B0 266 aaPredicted RBP17.1■□□□□ 0.33
CLN3-228ENST00000567804 MAFGO15525 162 aa17.1■□□□□ 0.33
CLN3-228ENST00000567804 GHRP10912 638 aa17.1■□□□□ 0.33
CLN3-228ENST00000567804 GPM6BQ13491 265 aa17.1■□□□□ 0.33
CLN3-228ENST00000567804 LPIN1Q14693 890 aa17.1■□□□□ 0.33
CLN3-228ENST00000567804 LEXMQ3ZCV2 418 aa17.1■□□□□ 0.33
CLN3-228ENST00000567804 TIGD5Q53EQ6 642 aa17.1■□□□□ 0.33
CLN3-228ENST00000567804 MARCH8Q5T0T0 291 aa17.1■□□□□ 0.33
CLN3-228ENST00000567804 RSPH3Q86UC2 560 aa17.1■□□□□ 0.33
CLN3-228ENST00000567804 GLG1Q92896 1179 aa17.1■□□□□ 0.33
CLN3-228ENST00000567804 EPHX3Q9H6B9 360 aa17.1■□□□□ 0.33
CLN3-228ENST00000567804 KCNA5P22460 613 aa17.09■□□□□ 0.33
CLN3-228ENST00000567804 FBXO47Q5MNV8 452 aa17.09■□□□□ 0.33
CLN3-228ENST00000567804 WWC2Q6AWC2 1192 aa17.09■□□□□ 0.33
CLN3-228ENST00000567804 APOA5Q6Q788 366 aa17.09■□□□□ 0.33
CLN3-228ENST00000567804 SYNE3Q6ZMZ3 975 aa17.09■□□□□ 0.33
CLN3-228ENST00000567804 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.09■□□□□ 0.33
CLN3-228ENST00000567804 DNAJB3Q8WWF6 145 aa17.09■□□□□ 0.33
CLN3-228ENST00000567804 RC3H2Q9HBD1 1191 aaKnown RBP17.09■□□□□ 0.33
CLN3-228ENST00000567804 JPH1Q9HDC5 661 aaPredicted RBP17.09■□□□□ 0.33
CLN3-228ENST00000567804 MYH9P35579 1960 aaKnown RBP17.09■□□□□ 0.33
CLN3-228ENST00000567804 EVPLQ92817 2033 aa17.09■□□□□ 0.33
CLN3-228ENST00000567804 RNF20Q5VTR2 975 aa17.08■□□□□ 0.32
CLN3-228ENST00000567804 TYW1BQ6NUM6 668 aa17.08■□□□□ 0.32
CLN3-228ENST00000567804 FIBCD1Q8N539 461 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms