RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 PCDHA6Q9UN73 950 aa17.08■□□□□ 0.32
CLN3-222ENST00000566083 PCDHA8Q9Y5H6 950 aa17.08■□□□□ 0.32
CLN3-222ENST00000566083 UBIAD1Q9Y5Z9 338 aa17.08■□□□□ 0.32
CLN3-222ENST00000566083 SPTBN5Q9NRC6 3674 aaKnown RBP17.07■□□□□ 0.32
CLN3-222ENST00000566083 CCDC196A0A1B0GTZ2 297 aa17.07■□□□□ 0.32
CLN3-222ENST00000566083 KCNA2P16389 499 aa17.07■□□□□ 0.32
CLN3-222ENST00000566083 ITGB5P18084 799 aa17.07■□□□□ 0.32
CLN3-222ENST00000566083 ERVK-21P61565 698 aa17.07■□□□□ 0.32
CLN3-222ENST00000566083 ADAM17P78536 824 aa17.07■□□□□ 0.32
CLN3-222ENST00000566083 ARHGAP4P98171 946 aa17.07■□□□□ 0.32
CLN3-222ENST00000566083 EXOSC10Q01780 885 aaKnown RBP17.07■□□□□ 0.32
CLN3-222ENST00000566083 SP4Q02446 784 aa17.07■□□□□ 0.32
CLN3-222ENST00000566083 GRB10Q13322 594 aa17.07■□□□□ 0.32
CLN3-222ENST00000566083 RTN1Q16799 776 aa17.07■□□□□ 0.32
CLN3-222ENST00000566083 FAM26DQ5JW98 314 aa17.07■□□□□ 0.32
CLN3-222ENST00000566083 SAMD11Q96NU1 681 aa17.07■□□□□ 0.32
CLN3-222ENST00000566083 RIC8AQ9NPQ8 531 aa17.07■□□□□ 0.32
CLN3-222ENST00000566083 CHD7Q9P2D1 2997 aa17.07■□□□□ 0.32
CLN3-222ENST00000566083 RFXAPO00287 272 aa17.06■□□□□ 0.32
CLN3-222ENST00000566083 NAPAP54920 295 aa17.06■□□□□ 0.32
CLN3-222ENST00000566083 FGD1P98174 961 aa17.06■□□□□ 0.32
CLN3-222ENST00000566083 TRIM50Q86XT4 487 aa17.06■□□□□ 0.32
CLN3-222ENST00000566083 ADAMTS19Q8TE59 1207 aa17.06■□□□□ 0.32
CLN3-222ENST00000566083 LMBR1Q8WVP7 490 aa17.06■□□□□ 0.32
CLN3-222ENST00000566083 GLG1Q92896 1179 aa17.06■□□□□ 0.32
CLN3-222ENST00000566083 AZI2Q9H6S1 392 aa17.06■□□□□ 0.32
CLN3-222ENST00000566083 LINC01553A4QN01 128 aa17.05■□□□□ 0.32
CLN3-222ENST00000566083 EPOPA6NHQ4 379 aa17.05■□□□□ 0.32
CLN3-222ENST00000566083 RRN3P2A6NIE6 340 aa17.05■□□□□ 0.32
CLN3-222ENST00000566083 HTRA4P83105 476 aaPredicted RBP17.05■□□□□ 0.32
CLN3-222ENST00000566083 PPFIA1Q13136 1202 aa17.05■□□□□ 0.32
CLN3-222ENST00000566083 AP3B2Q13367 1082 aa17.05■□□□□ 0.32
CLN3-222ENST00000566083 MKRN4PQ13434 485 aaPredicted RBP17.05■□□□□ 0.32
CLN3-222ENST00000566083 MCTP2Q6DN12 878 aa17.05■□□□□ 0.32
CLN3-222ENST00000566083 FAM43BQ6ZT52 329 aaPredicted RBP17.05■□□□□ 0.32
CLN3-222ENST00000566083 MYOCDQ8IZQ8 938 aa17.05■□□□□ 0.32
CLN3-222ENST00000566083 UHRF1Q96T88 793 aaPredicted RBP17.05■□□□□ 0.32
CLN3-222ENST00000566083 SDF4Q9BRK5 362 aa17.05■□□□□ 0.32
CLN3-222ENST00000566083 JPH1Q9HDC5 661 aaPredicted RBP17.05■□□□□ 0.32
CLN3-222ENST00000566083 CNTNAP5Q8WYK1 1306 aa17.05■□□□□ 0.32
CLN3-222ENST00000566083 hCG_1642624A0A1W2PR95 340 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 LCHNA4D1U4 455 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 ATP9AO75110 1047 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 ARHGEF15O94989 841 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 ADCY7P51828 1080 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 UBE2SQ16763 222 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 WWC2Q6AWC2 1192 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 RAB11FIP4Q86YS3 637 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 HLA-CQ95604 372 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 TOP1MTQ969P6 601 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 MXRA8Q9BRK3 442 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 IFIH1Q9BYX4 1025 aaKnown RBP17.04■□□□□ 0.32
CLN3-222ENST00000566083 KCNH7Q9NS40 1196 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 SLC9A2Q9UBY0 812 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 V9GY48 417 aaPredicted RBP17.04■□□□□ 0.32
CLN3-222ENST00000566083 BRWD1Q9NSI6 2320 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 NFASCO94856 1347 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 GSTTP1A0A1W2PQM5 241 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 GOLGA8AA7E2F4 631 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 GOLGA8BA8MQT2 603 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 LPXNO60711 386 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 CTSHP09668 335 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 TCTN1Q2MV58 587 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 CEP55Q53EZ4 464 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 FAM117BQ6P1L5 589 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.04■□□□□ 0.32
CLN3-222ENST00000566083 MICAL3Q7RTP6 2002 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 TMCO2Q7Z6W1 182 aaPredicted RBP17.04■□□□□ 0.32
CLN3-222ENST00000566083 SP7Q8TDD2 431 aaPredicted RBP17.04■□□□□ 0.32
CLN3-222ENST00000566083 CCDC12Q8WUD4 166 aaPredicted RBP17.04■□□□□ 0.32
CLN3-222ENST00000566083 YME1L1Q96TA2 773 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 SUGCTQ9HAC7 445 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 BARHL2Q9NY43 387 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 TUBE1Q9UJT0 475 aa17.04■□□□□ 0.32
CLN3-222ENST00000566083 KLF18A0A0U1RQI7 1052 aa17.03■□□□□ 0.32
CLN3-222ENST00000566083 MBLAC1A4D2B0 266 aaPredicted RBP17.03■□□□□ 0.32
CLN3-222ENST00000566083 SMCO2A6NFE2 343 aa17.03■□□□□ 0.32
CLN3-222ENST00000566083 SLC26A2P50443 739 aa17.03■□□□□ 0.32
CLN3-222ENST00000566083 COL9A3Q14050 684 aaPredicted RBP17.03■□□□□ 0.32
CLN3-222ENST00000566083 GRIK4Q16099 956 aa17.03■□□□□ 0.32
CLN3-222ENST00000566083 PTPROQ16827 1216 aa17.03■□□□□ 0.32
CLN3-222ENST00000566083 FBXO22Q8NEZ5 403 aa17.03■□□□□ 0.32
CLN3-222ENST00000566083 BRPF3Q9ULD4 1205 aa17.03■□□□□ 0.32
CLN3-222ENST00000566083 PTPRSQ13332 1948 aa17.02■□□□□ 0.32
CLN3-222ENST00000566083 BMP1P13497 986 aa17.02■□□□□ 0.31
CLN3-222ENST00000566083 FUT2Q10981 343 aa17.02■□□□□ 0.31
CLN3-222ENST00000566083 IER5Q5VY09 327 aa17.02■□□□□ 0.31
CLN3-222ENST00000566083 NIPA1Q7RTP0 329 aa17.02■□□□□ 0.31
CLN3-222ENST00000566083 PLPPR4Q7Z2D5 763 aa17.02■□□□□ 0.31
CLN3-222ENST00000566083 RASEFQ8IZ41 740 aa17.02■□□□□ 0.31
CLN3-222ENST00000566083 ANO3Q9BYT9 981 aa17.02■□□□□ 0.31
CLN3-222ENST00000566083 SQORQ9Y6N5 450 aa17.02■□□□□ 0.31
CLN3-222ENST00000566083 DOCK5Q9H7D0 1870 aa17.02■□□□□ 0.31
CLN3-222ENST00000566083 TRANK1O15050 2925 aa17.02■□□□□ 0.31
CLN3-222ENST00000566083 M0QZ92 97 aa17.01■□□□□ 0.31
CLN3-222ENST00000566083 STXBP3O00186 592 aa17.01■□□□□ 0.31
CLN3-222ENST00000566083 ZNF76P36508 570 aa17.01■□□□□ 0.31
CLN3-222ENST00000566083 SREBF1P36956 1147 aa17.01■□□□□ 0.31
CLN3-222ENST00000566083 PKD2L1Q9P0L9 805 aa17.01■□□□□ 0.31
CLN3-222ENST00000566083 MTUS1Q9ULD2 1270 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms