RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 GLG1Q92896 1179 aa23.68■■□□□ 1.38
CLN3-219ENST00000565778 SLC9A7Q96T83 725 aa23.68■■□□□ 1.38
CLN3-219ENST00000565778 GAS2L1Q99501 681 aaPredicted RBP23.68■■□□□ 1.38
CLN3-219ENST00000565778 C6orf50Q9HD87 102 aa23.68■■□□□ 1.38
CLN3-219ENST00000565778 TRIP12Q14669 1992 aaPredicted RBP23.67■■□□□ 1.38
CLN3-219ENST00000565778 KIF28PB7ZC32 967 aa23.67■■□□□ 1.38
CLN3-219ENST00000565778 PPFIA3O75145 1194 aa23.67■■□□□ 1.38
CLN3-219ENST00000565778 CXCL10P02778 98 aa23.67■■□□□ 1.38
CLN3-219ENST00000565778 HOXC8P31273 242 aa23.67■■□□□ 1.38
CLN3-219ENST00000565778 PKN1Q16512 942 aa23.67■■□□□ 1.38
CLN3-219ENST00000565778 CEP55Q53EZ4 464 aa23.67■■□□□ 1.38
CLN3-219ENST00000565778 ARP10275 920 aa23.66■■□□□ 1.38
CLN3-219ENST00000565778 SREBF1P36956 1147 aa23.66■■□□□ 1.38
CLN3-219ENST00000565778 EVCP57679 992 aa23.66■■□□□ 1.38
CLN3-219ENST00000565778 ARHGAP4P98171 946 aa23.66■■□□□ 1.38
CLN3-219ENST00000565778 IKBKEQ14164 716 aa23.66■■□□□ 1.38
CLN3-219ENST00000565778 PPP2R2DQ66LE6 453 aa23.66■■□□□ 1.38
CLN3-219ENST00000565778 TRAF7Q6Q0C0 670 aa23.66■■□□□ 1.38
CLN3-219ENST00000565778 SDF4Q9BRK5 362 aa23.66■■□□□ 1.38
CLN3-219ENST00000565778 SLC26A6Q9BXS9 759 aa23.66■■□□□ 1.38
CLN3-219ENST00000565778 TM6SF1Q9BZW5 370 aa23.66■■□□□ 1.38
CLN3-219ENST00000565778 ZMYND12Q9H0C1 365 aa23.66■■□□□ 1.38
CLN3-219ENST00000565778 SMARCAD1Q9H4L7 1026 aa23.66■■□□□ 1.38
CLN3-219ENST00000565778 NCOA5Q9HCD5 579 aaKnown RBP23.66■■□□□ 1.38
CLN3-219ENST00000565778 SLC9A2Q9UBY0 812 aa23.66■■□□□ 1.38
CLN3-219ENST00000565778 NRCAMQ92823 1304 aa23.65■■□□□ 1.38
CLN3-219ENST00000565778 IFNAR1P17181 557 aa23.65■■□□□ 1.38
CLN3-219ENST00000565778 MARK3P27448 753 aa23.65■■□□□ 1.38
CLN3-219ENST00000565778 TOB2Q14106 344 aaPredicted RBP23.65■■□□□ 1.38
CLN3-219ENST00000565778 NTRK3Q16288 839 aa23.65■■□□□ 1.38
CLN3-219ENST00000565778 MCTP2Q6DN12 878 aa23.65■■□□□ 1.38
CLN3-219ENST00000565778 HERC6Q8IVU3 1022 aa23.65■■□□□ 1.38
CLN3-219ENST00000565778 LARP6Q9BRS8 491 aaKnown RBP23.65■■□□□ 1.38
CLN3-219ENST00000565778 UPF3BQ9BZI7 483 aaKnown RBP23.65■■□□□ 1.38
CLN3-219ENST00000565778 JPH1Q9HDC5 661 aaPredicted RBP23.65■■□□□ 1.38
CLN3-219ENST00000565778 ERAP1Q9NZ08 941 aa23.65■■□□□ 1.38
CLN3-219ENST00000565778 NID2Q14112 1375 aa23.65■■□□□ 1.38
CLN3-219ENST00000565778 ABHD14A-ACY1A0A1B0GW23 586 aa23.64■■□□□ 1.37
CLN3-219ENST00000565778 ESYT2A0FGR8 921 aa23.64■■□□□ 1.37
CLN3-219ENST00000565778 MEIS1O00470 390 aa23.64■■□□□ 1.37
CLN3-219ENST00000565778 GNA11P29992 359 aa23.64■■□□□ 1.37
CLN3-219ENST00000565778 ZBED2Q9BTP6 218 aa23.64■■□□□ 1.37
CLN3-219ENST00000565778 RNF26Q9BY78 433 aaPredicted RBP23.64■■□□□ 1.37
CLN3-219ENST00000565778 AZI2Q9H6S1 392 aa23.64■■□□□ 1.37
CLN3-219ENST00000565778 AGO4Q9HCK5 861 aaKnown RBP23.64■■□□□ 1.37
CLN3-219ENST00000565778 EMSYQ7Z589 1322 aa23.63■■□□□ 1.37
CLN3-219ENST00000565778 LGR5O75473 907 aa23.63■■□□□ 1.37
CLN3-219ENST00000565778 CENPBP07199 599 aaPredicted RBP23.63■■□□□ 1.37
CLN3-219ENST00000565778 CA3P07451 260 aa23.63■■□□□ 1.37
CLN3-219ENST00000565778 IGFBP4P22692 258 aa23.63■■□□□ 1.37
CLN3-219ENST00000565778 WDR5P61964 334 aaKnown RBP23.63■■□□□ 1.37
CLN3-219ENST00000565778 MBTPS1Q14703 1052 aa23.63■■□□□ 1.37
CLN3-219ENST00000565778 TCTN1Q2MV58 587 aa23.63■■□□□ 1.37
CLN3-219ENST00000565778 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.63■■□□□ 1.37
CLN3-219ENST00000565778 LMBR1Q8WVP7 490 aa23.63■■□□□ 1.37
CLN3-219ENST00000565778 ZNF274Q96GC6 653 aaPredicted RBP23.63■■□□□ 1.37
CLN3-219ENST00000565778 DOCK5Q9H7D0 1870 aa23.63■■□□□ 1.37
CLN3-219ENST00000565778 PDRG1Q9NUG6 133 aa23.63■■□□□ 1.37
CLN3-219ENST00000565778 NFASCO94856 1347 aa23.62■■□□□ 1.37
CLN3-219ENST00000565778 EFCAB14O75071 495 aa23.62■■□□□ 1.37
CLN3-219ENST00000565778 CAND2O75155 1236 aa23.62■■□□□ 1.37
CLN3-219ENST00000565778 ADAM17P78536 824 aa23.62■■□□□ 1.37
CLN3-219ENST00000565778 SSRP1Q08945 709 aaKnown RBP23.62■■□□□ 1.37
CLN3-219ENST00000565778 PPFIA1Q13136 1202 aa23.62■■□□□ 1.37
CLN3-219ENST00000565778 NIPA1Q7RTP0 329 aa23.62■■□□□ 1.37
CLN3-219ENST00000565778 PLA2G4DQ86XP0 818 aa23.62■■□□□ 1.37
CLN3-219ENST00000565778 REXO1Q8N1G1 1221 aaKnown RBP23.62■■□□□ 1.37
CLN3-219ENST00000565778 DBF4BQ8NFT6 615 aa23.62■■□□□ 1.37
CLN3-219ENST00000565778 BICD2Q8TD16 824 aa23.62■■□□□ 1.37
CLN3-219ENST00000565778 RBAK-RBAKDNI3L0D1 243 aa23.61■■□□□ 1.37
CLN3-219ENST00000565778 DLL1O00548 723 aa23.61■■□□□ 1.37
CLN3-219ENST00000565778 CPLX1O14810 134 aa23.61■■□□□ 1.37
CLN3-219ENST00000565778 ADAMTS3O15072 1205 aa23.61■■□□□ 1.37
CLN3-219ENST00000565778 TLL1O43897 1013 aa23.61■■□□□ 1.37
CLN3-219ENST00000565778 CTSHP09668 335 aa23.61■■□□□ 1.37
CLN3-219ENST00000565778 ACTR2P61160 394 aa23.61■■□□□ 1.37
CLN3-219ENST00000565778 TRIM22Q8IYM9 498 aa23.61■■□□□ 1.37
CLN3-219ENST00000565778 CCDC148Q8NFR7 591 aa23.61■■□□□ 1.37
CLN3-219ENST00000565778 PPM1EQ8WY54 764 aa23.61■■□□□ 1.37
CLN3-219ENST00000565778 TET1Q8NFU7 2136 aa23.6■■□□□ 1.37
CLN3-219ENST00000565778 TANC1Q9C0D5 1861 aa23.6■■□□□ 1.37
CLN3-219ENST00000565778 FAM86B1E9PN63 330 aa23.6■■□□□ 1.37
CLN3-219ENST00000565778 CYP3A4P08684 503 aa23.6■■□□□ 1.37
CLN3-219ENST00000565778 FAM86B2P0C5J1 330 aa23.6■■□□□ 1.37
CLN3-219ENST00000565778 DEFB103AP81534 67 aa23.6■■□□□ 1.37
CLN3-219ENST00000565778 STK3Q13188 491 aa23.6■■□□□ 1.37
CLN3-219ENST00000565778 ITGB3BPQ13352 177 aaPredicted RBP23.6■■□□□ 1.37
CLN3-219ENST00000565778 GRIK4Q16099 956 aa23.6■■□□□ 1.37
CLN3-219ENST00000565778 TMCO2Q7Z6W1 182 aaPredicted RBP23.6■■□□□ 1.37
CLN3-219ENST00000565778 TNPO1Q92973 898 aaKnown RBP23.6■■□□□ 1.37
CLN3-219ENST00000565778 PCYT2Q99447 389 aa23.6■■□□□ 1.37
CLN3-219ENST00000565778 VPS54Q9P1Q0 977 aa23.6■■□□□ 1.37
CLN3-219ENST00000565778 DDX39AO00148 427 aaKnown RBP23.59■■□□□ 1.37
CLN3-219ENST00000565778 STAT5BP51692 787 aa23.59■■□□□ 1.37
CLN3-219ENST00000565778 NLRP5P59047 1200 aa23.59■■□□□ 1.37
CLN3-219ENST00000565778 IGBP1P78318 339 aa23.59■■□□□ 1.37
CLN3-219ENST00000565778 ADGRE1Q14246 886 aa23.59■■□□□ 1.37
CLN3-219ENST00000565778 CPLX2Q6PUV4 134 aaKnown RBP23.59■■□□□ 1.37
CLN3-219ENST00000565778 SEPT8Q92599 483 aa23.59■■□□□ 1.37
CLN3-219ENST00000565778 UIMC1Q96RL1 719 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms