RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 RNPEPQ9H4A4 650 aa15.56■□□□□ 0.08
VPS9D1-204ENST00000565023 C6orf50Q9HD87 102 aa15.56■□□□□ 0.08
VPS9D1-204ENST00000565023 VPS54Q9P1Q0 977 aa15.56■□□□□ 0.08
VPS9D1-204ENST00000565023 MSRAQ9UJ68 235 aa15.56■□□□□ 0.08
VPS9D1-204ENST00000565023 ZNF215Q9UL58 517 aaPredicted RBP15.56■□□□□ 0.08
VPS9D1-204ENST00000565023 NID2Q14112 1375 aa15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 CPLX1O14810 134 aa15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 TREHO43280 583 aa15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 PFKMP08237 780 aa15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 RFC2P35250 354 aa15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 THPOP40225 353 aa15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 CLK2P49760 499 aaKnown RBP15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 ARHGAP4P98171 946 aa15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 PTK7Q13308 1070 aa15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 AP3B2Q13367 1082 aa15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 NTRK3Q16288 839 aa15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 ZNF618Q5T7W0 954 aa15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 CCDC12Q8WUD4 166 aaPredicted RBP15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 ZNF576Q9H609 170 aa15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 KCNH7Q9NS40 1196 aa15.55■□□□□ 0.08
VPS9D1-204ENST00000565023 GSTTP1A0A1W2PQM5 241 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 CTSHP09668 335 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 MYOGP15173 224 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 ATP2A2P16615 1042 aaKnown RBP15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 IFNAR1P17181 557 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 SREBF1P36956 1147 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 EVCP57679 992 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 SSRP1Q08945 709 aaKnown RBP15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 GRIN2CQ14957 1233 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 CEP55Q53EZ4 464 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 PLA2G4DQ86XP0 818 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 REXO1Q8N1G1 1221 aaKnown RBP15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 SEPT1Q8WYJ6 367 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 GLG1Q92896 1179 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 SDF4Q9BRK5 362 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 RNF26Q9BY78 433 aaPredicted RBP15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 GLT8D2Q9H1C3 349 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 JPH1Q9HDC5 661 aaPredicted RBP15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 YBX2Q9Y2T7 364 aaKnown RBP15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 PTPRSQ13332 1948 aa15.54■□□□□ 0.08
VPS9D1-204ENST00000565023 FOSL2P15408 326 aa15.53■□□□□ 0.08
VPS9D1-204ENST00000565023 NLRP5P59047 1200 aa15.53■□□□□ 0.08
VPS9D1-204ENST00000565023 IGBP1P78318 339 aa15.53■□□□□ 0.08
VPS9D1-204ENST00000565023 RAB30Q15771 203 aa15.53■□□□□ 0.08
VPS9D1-204ENST00000565023 TRIM71Q2Q1W2 868 aaKnown RBP15.53■□□□□ 0.08
VPS9D1-204ENST00000565023 TRIM22Q8IYM9 498 aa15.53■□□□□ 0.08
VPS9D1-204ENST00000565023 CCDC148Q8NFR7 591 aa15.53■□□□□ 0.08
VPS9D1-204ENST00000565023 ZMYND12Q9H0C1 365 aa15.53■□□□□ 0.08
VPS9D1-204ENST00000565023 AGO4Q9HCK5 861 aaKnown RBP15.53■□□□□ 0.08
VPS9D1-204ENST00000565023 SLC9A2Q9UBY0 812 aa15.53■□□□□ 0.08
VPS9D1-204ENST00000565023 CDH23Q9H251 3354 aa15.53■□□□□ 0.08
VPS9D1-204ENST00000565023 ESYT2A0FGR8 921 aa15.52■□□□□ 0.08
VPS9D1-204ENST00000565023 MAFGO15525 162 aa15.52■□□□□ 0.08
VPS9D1-204ENST00000565023 NBNO60934 754 aa15.52■□□□□ 0.08
VPS9D1-204ENST00000565023 GNA11P29992 359 aa15.52■□□□□ 0.08
VPS9D1-204ENST00000565023 KCNJ6P48051 423 aa15.52■□□□□ 0.08
VPS9D1-204ENST00000565023 PPFIA1Q13136 1202 aa15.52■□□□□ 0.08
VPS9D1-204ENST00000565023 GPNMBQ14956 572 aa15.52■□□□□ 0.08
VPS9D1-204ENST00000565023 TCTN1Q2MV58 587 aa15.52■□□□□ 0.08
VPS9D1-204ENST00000565023 TMCO2Q7Z6W1 182 aaPredicted RBP15.52■□□□□ 0.08
VPS9D1-204ENST00000565023 SERINC5Q86VE9 423 aa15.52■□□□□ 0.08
VPS9D1-204ENST00000565023 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.52■□□□□ 0.08
VPS9D1-204ENST00000565023 AIFM3Q96NN9 605 aa15.52■□□□□ 0.08
VPS9D1-204ENST00000565023 PRDM12Q9H4Q4 367 aa15.52■□□□□ 0.08
VPS9D1-204ENST00000565023 TMEM265A0A087WTH1 108 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 RSPH10B2B2RC85 870 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 FAM86B1E9PN63 330 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 FAM86B2P0C5J1 330 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 RSPH10BP0C881 870 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 GNAT1P11488 350 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 ACTR2P61160 394 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 RBL2Q08999 1139 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 ITGB3BPQ13352 177 aaPredicted RBP15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 FAM117BQ6P1L5 589 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 CPLX2Q6PUV4 134 aaKnown RBP15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 LMBR1Q8WVP7 490 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 ZBTB10Q96DT7 871 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 ZNF274Q96GC6 653 aaPredicted RBP15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 SLKQ9H2G2 1235 aaPredicted RBP15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 SLC28A3Q9HAS3 691 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 ERAP1Q9NZ08 941 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 TRPC6Q9Y210 931 aa15.51■□□□□ 0.07
VPS9D1-204ENST00000565023 MEIS1O00470 390 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 RBM25P49756 843 aaKnown RBP15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 DEFB103AP81534 67 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 SCRN1Q12765 414 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 MBTPS1Q14703 1052 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 PPP2R2DQ66LE6 453 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 CNKSR3Q6P9H4 555 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 TRAF7Q6Q0C0 670 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 MAFAQ8NHW3 353 aaPredicted RBP15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 BICD2Q8TD16 824 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 PPM1EQ8WY54 764 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 SLC9A7Q96T83 725 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 PCYT2Q99447 389 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 C22orf23Q9BZE7 217 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 SMARCAD1Q9H4L7 1026 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 AZI2Q9H6S1 392 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 CERS4Q9HA82 394 aa15.5■□□□□ 0.07
VPS9D1-204ENST00000565023 MYH9P35579 1960 aaKnown RBP15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms