RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TCF20Q9UGU0 1960 aaKnown RBP19.4■□□□□ 0.7
CLN3-211ENST00000564091 CCDC69A6NI79 296 aa19.39■□□□□ 0.69
CLN3-211ENST00000564091 CHRNA1P02708 482 aa19.39■□□□□ 0.69
CLN3-211ENST00000564091 KCNA2P16389 499 aa19.39■□□□□ 0.69
CLN3-211ENST00000564091 ITGB5P18084 799 aa19.39■□□□□ 0.69
CLN3-211ENST00000564091 MCM5P33992 734 aa19.39■□□□□ 0.69
CLN3-211ENST00000564091 TCF7P36402 384 aaPredicted RBP19.39■□□□□ 0.69
CLN3-211ENST00000564091 GNAQP50148 359 aa19.39■□□□□ 0.69
CLN3-211ENST00000564091 UBE2SQ16763 222 aa19.39■□□□□ 0.69
CLN3-211ENST00000564091 CCDC82Q8N4S0 544 aa19.39■□□□□ 0.69
CLN3-211ENST00000564091 LRRC2Q9BYS8 371 aa19.39■□□□□ 0.69
CLN3-211ENST00000564091 IFIH1Q9BYX4 1025 aaKnown RBP19.39■□□□□ 0.69
CLN3-211ENST00000564091 LSG1Q9H089 658 aaKnown RBP19.39■□□□□ 0.69
CLN3-211ENST00000564091 CD320Q9NPF0 282 aa19.39■□□□□ 0.69
CLN3-211ENST00000564091 NRCAMQ92823 1304 aa19.39■□□□□ 0.69
CLN3-211ENST00000564091 GHRP10912 638 aa19.38■□□□□ 0.69
CLN3-211ENST00000564091 MARK3P27448 753 aa19.38■□□□□ 0.69
CLN3-211ENST00000564091 GPM6BQ13491 265 aa19.38■□□□□ 0.69
CLN3-211ENST00000564091 TMEM192Q8IY95 271 aa19.38■□□□□ 0.69
CLN3-211ENST00000564091 TMTC2Q8N394 836 aa19.38■□□□□ 0.69
CLN3-211ENST00000564091 GIMAP8Q8ND71 665 aaPredicted RBP19.38■□□□□ 0.69
CLN3-211ENST00000564091 GPRASP2Q96D09 838 aa19.38■□□□□ 0.69
CLN3-211ENST00000564091 MRPL38Q96DV4 380 aaKnown RBP19.38■□□□□ 0.69
CLN3-211ENST00000564091 MTA3Q9BTC8 594 aa19.38■□□□□ 0.69
CLN3-211ENST00000564091 BRWD1Q9NSI6 2320 aa19.38■□□□□ 0.69
CLN3-211ENST00000564091 GSTTP1A0A1W2PQM5 241 aa19.37■□□□□ 0.69
CLN3-211ENST00000564091 H3BNC9 293 aa19.37■□□□□ 0.69
CLN3-211ENST00000564091 SLC27A2O14975 620 aa19.37■□□□□ 0.69
CLN3-211ENST00000564091 PPFIA1Q13136 1202 aa19.37■□□□□ 0.69
CLN3-211ENST00000564091 PTPROQ16827 1216 aa19.37■□□□□ 0.69
CLN3-211ENST00000564091 LEXMQ3ZCV2 418 aa19.37■□□□□ 0.69
CLN3-211ENST00000564091 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.37■□□□□ 0.69
CLN3-211ENST00000564091 SEPT1Q8WYJ6 367 aa19.37■□□□□ 0.69
CLN3-211ENST00000564091 APBB2Q92870 758 aa19.37■□□□□ 0.69
CLN3-211ENST00000564091 TMEM87BQ96K49 555 aa19.37■□□□□ 0.69
CLN3-211ENST00000564091 SAMD11Q96NU1 681 aa19.37■□□□□ 0.69
CLN3-211ENST00000564091 LRFN3Q9BTN0 628 aa19.37■□□□□ 0.69
CLN3-211ENST00000564091 PTPRSQ13332 1948 aa19.36■□□□□ 0.69
CLN3-211ENST00000564091 LIFRP42702 1097 aa19.36■□□□□ 0.69
CLN3-211ENST00000564091 CREB3L3Q68CJ9 461 aa19.36■□□□□ 0.69
CLN3-211ENST00000564091 GLG1Q92896 1179 aa19.36■□□□□ 0.69
CLN3-211ENST00000564091 ZBTB10Q96DT7 871 aa19.36■□□□□ 0.69
CLN3-211ENST00000564091 CDHR1Q96JP9 859 aa19.36■□□□□ 0.69
CLN3-211ENST00000564091 PCDHA6Q9UN73 950 aa19.36■□□□□ 0.69
CLN3-211ENST00000564091 PCDHA8Q9Y5H6 950 aa19.36■□□□□ 0.69
CLN3-211ENST00000564091 UBIAD1Q9Y5Z9 338 aa19.36■□□□□ 0.69
CLN3-211ENST00000564091 SLC12A7Q9Y666 1083 aa19.36■□□□□ 0.69
CLN3-211ENST00000564091 SPDYE3A6NKU9 549 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 H3BQ06 376 aaPredicted RBP19.35■□□□□ 0.69
CLN3-211ENST00000564091 IL9P15248 144 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 MGAT3Q09327 533 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 MTMR1Q13613 665 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 LPIN1Q14693 890 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 GRIK4Q16099 956 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 TAF2Q6P1X5 1199 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 TMTC3Q6ZXV5 915 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 RPAINQ86UA6 219 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 BANK1Q8NDB2 785 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 DNAJB3Q8WWF6 145 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 IL17RAQ96F46 866 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 ESYT1Q9BSJ8 1104 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 EHMT1Q9H9B1 1298 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 JADE2Q9NQC1 790 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 ERAP1Q9NZ08 941 aa19.35■□□□□ 0.69
CLN3-211ENST00000564091 MYH6P13533 1939 aa19.34■□□□□ 0.69
CLN3-211ENST00000564091 CALM1P0DP23 149 aa19.34■□□□□ 0.69
CLN3-211ENST00000564091 CALM2P0DP24 149 aa19.34■□□□□ 0.69
CLN3-211ENST00000564091 CALM3P0DP25 149 aa19.34■□□□□ 0.69
CLN3-211ENST00000564091 IGBP1P78318 339 aa19.34■□□□□ 0.69
CLN3-211ENST00000564091 TCEAL5Q5H9L2 206 aa19.34■□□□□ 0.69
CLN3-211ENST00000564091 TMEM31Q5JXX7 168 aa19.34■□□□□ 0.69
CLN3-211ENST00000564091 MARCH8Q5T0T0 291 aa19.34■□□□□ 0.69
CLN3-211ENST00000564091 PTCRAQ6ISU1 281 aaPredicted RBP19.34■□□□□ 0.69
CLN3-211ENST00000564091 HEATR3Q7Z4Q2 680 aa19.34■□□□□ 0.69
CLN3-211ENST00000564091 MICU3Q86XE3 530 aa19.34■□□□□ 0.69
CLN3-211ENST00000564091 FANCBQ8NB91 859 aa19.34■□□□□ 0.69
CLN3-211ENST00000564091 TUBE1Q9UJT0 475 aa19.34■□□□□ 0.69
CLN3-211ENST00000564091 MBLAC1A4D2B0 266 aaPredicted RBP19.33■□□□□ 0.68
CLN3-211ENST00000564091 FAM86C2PA6NEL3 165 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 ENPP3O14638 875 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 NECTIN1Q15223 517 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 TIGD5Q53EQ6 642 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 EP400NLQ6ZTU2 488 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 RSPH3Q86UC2 560 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 FAM178BQ8IXR5 827 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 GJD3Q8N144 294 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 FIBCD1Q8N539 461 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 PCYT2Q99447 389 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 SMARCAD1Q9H4L7 1026 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 C11orf16Q9NQ32 467 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 ANO2Q9NQ90 1003 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 CDY2AQ9Y6F7 541 aa19.33■□□□□ 0.68
CLN3-211ENST00000564091 CTNNB1P35222 781 aa19.32■□□□□ 0.68
CLN3-211ENST00000564091 PLA2G5P39877 138 aa19.32■□□□□ 0.68
CLN3-211ENST00000564091 FBXO47Q5MNV8 452 aa19.32■□□□□ 0.68
CLN3-211ENST00000564091 CYP2W1Q8TAV3 490 aa19.32■□□□□ 0.68
CLN3-211ENST00000564091 NEK9Q8TD19 979 aa19.32■□□□□ 0.68
CLN3-211ENST00000564091 FAM122AQ96E09 287 aa19.32■□□□□ 0.68
CLN3-211ENST00000564091 PGBD1Q96JS3 809 aa19.32■□□□□ 0.68
CLN3-211ENST00000564091 FAM49AQ9H0Q0 323 aaPredicted RBP19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms