RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 CCDC148Q8NFR7 591 aa17.86■□□□□ 0.45
VPS39-203ENST00000561797 RASGRP4Q8TDF6 673 aa17.86■□□□□ 0.45
VPS39-203ENST00000561797 GUCD1Q96NT3 240 aa17.86■□□□□ 0.45
VPS39-203ENST00000561797 UIMC1Q96RL1 719 aa17.86■□□□□ 0.45
VPS39-203ENST00000561797 SDF4Q9BRK5 362 aa17.86■□□□□ 0.45
VPS39-203ENST00000561797 SETD4Q9NVD3 440 aa17.86■□□□□ 0.45
VPS39-203ENST00000561797 SLC9A2Q9UBY0 812 aa17.86■□□□□ 0.45
VPS39-203ENST00000561797 SLC4A7Q9Y6M7 1214 aa17.86■□□□□ 0.45
VPS39-203ENST00000561797 MYO9BQ13459 2157 aa17.86■□□□□ 0.45
VPS39-203ENST00000561797 RBAK-RBAKDNI3L0D1 243 aa17.85■□□□□ 0.45
VPS39-203ENST00000561797 MEIS1O00470 390 aa17.85■□□□□ 0.45
VPS39-203ENST00000561797 TREHO43280 583 aa17.85■□□□□ 0.45
VPS39-203ENST00000561797 SEC24BO95487 1268 aa17.85■□□□□ 0.45
VPS39-203ENST00000561797 NLRP5P59047 1200 aa17.85■□□□□ 0.45
VPS39-203ENST00000561797 TRIM71Q2Q1W2 868 aaKnown RBP17.85■□□□□ 0.45
VPS39-203ENST00000561797 ZNF618Q5T7W0 954 aa17.85■□□□□ 0.45
VPS39-203ENST00000561797 MCTP2Q6DN12 878 aa17.85■□□□□ 0.45
VPS39-203ENST00000561797 CPLX2Q6PUV4 134 aaKnown RBP17.85■□□□□ 0.45
VPS39-203ENST00000561797 PLA2G4DQ86XP0 818 aa17.85■□□□□ 0.45
VPS39-203ENST00000561797 BICD2Q8TD16 824 aa17.85■□□□□ 0.45
VPS39-203ENST00000561797 GLG1Q92896 1179 aa17.85■□□□□ 0.45
VPS39-203ENST00000561797 PBX4Q9BYU1 374 aa17.85■□□□□ 0.45
VPS39-203ENST00000561797 AGO4Q9HCK5 861 aaKnown RBP17.85■□□□□ 0.45
VPS39-203ENST00000561797 JPH1Q9HDC5 661 aaPredicted RBP17.85■□□□□ 0.45
VPS39-203ENST00000561797 EVPLQ92817 2033 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 SIP14410 1827 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 NFASCO94856 1347 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 FAM86B1E9PN63 330 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 DDX39AO00148 427 aaKnown RBP17.84■□□□□ 0.45
VPS39-203ENST00000561797 FAM86B2P0C5J1 330 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 MARK3P27448 753 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 THPOP40225 353 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 RBL2Q08999 1139 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 ITGB3BPQ13352 177 aaPredicted RBP17.84■□□□□ 0.45
VPS39-203ENST00000561797 GPNMBQ14956 572 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 SERINC5Q86VE9 423 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 TIFAQ96CG3 184 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 SLKQ9H2G2 1235 aaPredicted RBP17.84■□□□□ 0.45
VPS39-203ENST00000561797 SH3GLB2Q9NR46 395 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 MSRAQ9UJ68 235 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 TPCN1Q9ULQ1 816 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 STXBP5LQ9Y2K9 1186 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 MICAL3Q7RTP6 2002 aa17.84■□□□□ 0.45
VPS39-203ENST00000561797 EIF5BO60841 1220 aaKnown RBP17.83■□□□□ 0.44
VPS39-203ENST00000561797 NBNO60934 754 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 DTNBO60941 627 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 DEXIO95424 95 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 CYP3A4P08684 503 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 GNAT1P11488 350 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 HOXC8P31273 242 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 RABGGTBP53611 331 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 AK2P54819 239 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 SCRN1Q12765 414 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 NIPA1Q7RTP0 329 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 LMBR1Q8WVP7 490 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 CRYGNQ8WXF5 182 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 AIFM3Q96NN9 605 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 CDX2Q99626 313 aaPredicted RBP17.83■□□□□ 0.44
VPS39-203ENST00000561797 SMARCAD1Q9H4L7 1026 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 ERAP1Q9NZ08 941 aa17.83■□□□□ 0.44
VPS39-203ENST00000561797 TMEM265A0A087WTH1 108 aa17.82■□□□□ 0.44
VPS39-203ENST00000561797 PARNO95453 639 aaKnown RBP17.82■□□□□ 0.44
VPS39-203ENST00000561797 ATP2A2P16615 1042 aaKnown RBP17.82■□□□□ 0.44
VPS39-203ENST00000561797 ACTR2P61160 394 aa17.82■□□□□ 0.44
VPS39-203ENST00000561797 RAB30Q15771 203 aa17.82■□□□□ 0.44
VPS39-203ENST00000561797 TRAF7Q6Q0C0 670 aa17.82■□□□□ 0.44
VPS39-203ENST00000561797 MYLIPQ8WY64 445 aa17.82■□□□□ 0.44
VPS39-203ENST00000561797 NKX2-4Q9H2Z4 354 aa17.82■□□□□ 0.44
VPS39-203ENST00000561797 ZNF576Q9H609 170 aa17.82■□□□□ 0.44
VPS39-203ENST00000561797 EMSYQ7Z589 1322 aa17.81■□□□□ 0.44
VPS39-203ENST00000561797 IGLV3-22A0A075B6J6 115 aa17.81■□□□□ 0.44
VPS39-203ENST00000561797 RSPH10B2B2RC85 870 aa17.81■□□□□ 0.44
VPS39-203ENST00000561797 PFKFB2O60825 505 aa17.81■□□□□ 0.44
VPS39-203ENST00000561797 RSPH10BP0C881 870 aa17.81■□□□□ 0.44
VPS39-203ENST00000561797 ANKRD1Q15327 319 aa17.81■□□□□ 0.44
VPS39-203ENST00000561797 PCYT2Q99447 389 aa17.81■□□□□ 0.44
VPS39-203ENST00000561797 AZI2Q9H6S1 392 aa17.81■□□□□ 0.44
VPS39-203ENST00000561797 YBX2Q9Y2T7 364 aaKnown RBP17.81■□□□□ 0.44
VPS39-203ENST00000561797 NRCAMQ92823 1304 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 LAMA2P24043 3122 aaKnown RBP17.8■□□□□ 0.44
VPS39-203ENST00000561797 IPO5O00410 1097 aaKnown RBP17.8■□□□□ 0.44
VPS39-203ENST00000561797 LGR5O75473 907 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 CDKL5O76039 1030 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 CXCL10P02778 98 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 CTSHP09668 335 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 MYOGP15173 224 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 NEK4P51957 841 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 IGBP1P78318 339 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 ADAM17P78536 824 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 PPFIA1Q13136 1202 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 MBTPS1Q14703 1052 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 GRIN2CQ14957 1233 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 GRIK4Q16099 956 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 TCTN1Q2MV58 587 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 PRR16Q569H4 304 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 CNKSR3Q6P9H4 555 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 ZNF577Q9BSK1 485 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 PCDHA4Q9UN74 947 aa17.8■□□□□ 0.44
VPS39-203ENST00000561797 BAIAP3O94812 1187 aa17.79■□□□□ 0.44
VPS39-203ENST00000561797 CCNE2O96020 404 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms