RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 C17orf102A2RUQ5 167 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 PFKFB2O60825 505 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 FGBP02675 491 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 LGALS2P05162 132 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 CYP3A4P08684 503 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 STK3Q13188 491 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 PTK7Q13308 1070 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 SAFBQ15424 915 aaKnown RBP eCLIP9.84□□□□□ -0.83
USP3-208ENST00000558285 JAKMIP3Q5VZ66 844 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 KRT25Q7Z3Z0 450 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 IL17RAQ96F46 866 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 NOC4LQ9BVI4 516 aaKnown RBP9.84□□□□□ -0.83
USP3-208ENST00000558285 TRPV6Q9H1D0 765 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 SH2B1Q9NRF2 756 aaPredicted RBP9.84□□□□□ -0.83
USP3-208ENST00000558285 SLC9A2Q9UBY0 812 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 GTF2IRD1Q9UHL9 959 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 PCDHA4Q9UN74 947 aa9.84□□□□□ -0.83
USP3-208ENST00000558285 TMEM265A0A087WTH1 108 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.83□□□□□ -0.84
USP3-208ENST00000558285 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.83□□□□□ -0.84
USP3-208ENST00000558285 RRN3P2A6NIE6 340 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 MARCH6O60337 910 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 RGS20O76081 388 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 ZNF286BP0CG31 522 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 FXR1P51114 621 aaKnown RBP eCLIP9.83□□□□□ -0.84
USP3-208ENST00000558285 SMAD3P84022 425 aaKnown RBP9.83□□□□□ -0.84
USP3-208ENST00000558285 HSDL1Q3SXM5 330 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 MIS18BP1Q6P0N0 1132 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 TAF2Q6P1X5 1199 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 SH3RF1Q7Z6J0 888 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 PLA2G4DQ86XP0 818 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 SMAP1Q8IYB5 467 aaPredicted RBP9.83□□□□□ -0.84
USP3-208ENST00000558285 GPR20Q99678 358 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 KCNH7Q9NS40 1196 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 LIMCH1Q9UPQ0 1083 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 NRCAMQ92823 1304 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 BAZ2BQ9UIF8 2168 aaKnown RBP9.83□□□□□ -0.84
USP3-208ENST00000558285 LCTP09848 1927 aa9.83□□□□□ -0.84
USP3-208ENST00000558285 KIF28PB7ZC32 967 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 M0QZ92 97 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 SELPP16109 830 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 GCFC2P16383 781 aaKnown RBP9.82□□□□□ -0.84
USP3-208ENST00000558285 TCF7P36402 384 aaPredicted RBP9.82□□□□□ -0.84
USP3-208ENST00000558285 MCM2P49736 904 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 CLK2P49760 499 aaKnown RBP9.82□□□□□ -0.84
USP3-208ENST00000558285 AK2P54819 239 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 HMGN5P82970 282 aaKnown RBP9.82□□□□□ -0.84
USP3-208ENST00000558285 KRT76Q01546 638 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 SP4Q02446 784 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 NONOQ15233 471 aaKnown RBP eCLIP9.82□□□□□ -0.84
USP3-208ENST00000558285 RABEP1Q15276 862 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 RAB30Q15771 203 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 NTRK3Q16288 839 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 UTP14CQ5TAP6 766 aaKnown RBP9.82□□□□□ -0.84
USP3-208ENST00000558285 ZNF697Q5TEC3 545 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 BLIDQ8IZY5 108 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 DAGLBQ8NCG7 672 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 ATP6V0A1Q93050 837 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 ZNF577Q9BSK1 485 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 FTOQ9C0B1 505 aaKnown RBP eCLIP9.82□□□□□ -0.84
USP3-208ENST00000558285 NCOA5Q9HCD5 579 aaKnown RBP9.82□□□□□ -0.84
USP3-208ENST00000558285 TRMT13Q9NUP7 481 aaKnown RBP9.82□□□□□ -0.84
USP3-208ENST00000558285 VPS54Q9P1Q0 977 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 MSRAQ9UJ68 235 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 HAS3O00219 553 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 IPO5O00410 1097 aaKnown RBP9.82□□□□□ -0.84
USP3-208ENST00000558285 MEIS1O00470 390 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 BACH1O14867 736 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 DKC1O60832 514 aaKnown RBP eCLIP9.82□□□□□ -0.84
USP3-208ENST00000558285 BAIAP3O94812 1187 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 CSF2RAP15509 400 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 ITGB5P18084 799 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 CYP2C18P33260 490 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 KCNJ6P48051 423 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 IRX5P78411 483 aaPredicted RBP9.82□□□□□ -0.84
USP3-208ENST00000558285 FAM109BQ6ICB4 259 aaPredicted RBP9.82□□□□□ -0.84
USP3-208ENST00000558285 MOXD1Q6UVY6 613 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 ZNF710Q8N1W2 664 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 FAM167AQ96KS9 214 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 LLPHQ9BRT6 129 aaKnown RBP9.82□□□□□ -0.84
USP3-208ENST00000558285 SLC24A3Q9HC58 644 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 ORC3Q9UBD5 711 aaPredicted RBP9.82□□□□□ -0.84
USP3-208ENST00000558285 HDAC6Q9UBN7 1215 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 CEP131Q9UPN4 1083 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 STK24Q9Y6E0 443 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 SLC4A7Q9Y6M7 1214 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 KIAA1217Q5T5P2 1943 aa9.82□□□□□ -0.84
USP3-208ENST00000558285 ALPK3Q96L96 1907 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 ZBBXA8MT70 800 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 SLC34A2O95436 690 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 PSAPP07602 524 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 SMIM10L2AP0DMW4 78 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 SMIM10L2BP0DMW5 78 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 KCNA2P16389 499 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 SFNP31947 248 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 CLCN1P35523 988 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 SP2Q02086 613 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 PPFIA1Q13136 1202 aa9.81□□□□□ -0.84
USP3-208ENST00000558285 GNL2Q13823 731 aaKnown RBP9.81□□□□□ -0.84
USP3-208ENST00000558285 SHHQ15465 462 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms